Galaxy UFZ - Tool Wrappers Collection

This repository contains tools mantained within the UFZ and that can be installed and used inside any Galaxy instance.

Contributions are welcome. Please open an issue or a PR in case you want to contribute to the tool list.

List of Tools

Time series data

Tools to analyze time-series data for environmental sensor data

• SaQC with SaQC

OMERO-suite

A set of tools to import image and metadata in OMERO using Galaxy

• OMERO Image Import with omero-py
• OMERO IDs with ezomero
• OMERO get IDs with ezomero
• OMERO get Object with ezomero
• OMERO ROI Import with ezomero
• OMERO Metadata Import with ezomero
• OMERO Dataset to Plate with ezomero

Chemoinformatics

Tools to molecular structures of chemicals with multiple targets.

• deepFPlearn train with deepFPlearn
• deepFPlearn predict with deepFPlearn

Toxicology and Ecotoxicology

Toxicity prediction and dose response curves

• QSAR Baseline Calculator with pandas
• Dose Response Modelling with drc

Data Wrangling

Tools for data conversion and data wrangling

• Excel to Tabular with pandas

Related Matherial

OMERO

• Galaxy Training Matherial for the OMERO-suite
• OMERO-suite Poster Publication on Zenodo

Time Series Anaylsis

• SaQC publication
• SaQC software

Chemoinformatics

• deepFPlearn repo