Update cell_by_location.rq #135
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Updating to be more generic
gouttegd
approved these changes
Dec 18, 2023
switched to union of part_of and has_soma_location
balhoff
requested changes
Jan 5, 2024
| #+ summary: Find cells by location | ||
| #+ description: Enter an anatomical location, get back a list of cell type IRIs and labels | ||
| #+ summary: Find cells by type and location | ||
| #+ description: Args: cell: the iri or a cell type; location: the iri of an anatomical location. All args are optional. With no args returns all cells with an anatomical location. Location is a union of part_of (suitable for location of most cells) and has_soma_location (used for neurons). This pattern is designed for safe grouping of cell annotations. Returns: a 2 column table: cell (type) IRIs and cell (type) labels. |
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| #+ description: Args: cell: the iri or a cell type; location: the iri of an anatomical location. All args are optional. With no args returns all cells with an anatomical location. Location is a union of part_of (suitable for location of most cells) and has_soma_location (used for neurons). This pattern is designed for safe grouping of cell annotations. Returns: a 2 column table: cell (type) IRIs and cell (type) labels. | |
| #+ description: Args: cell: the iri of a cell type; location: the iri of an anatomical location. All args are optional. With no args returns all cells with an anatomical location. Location is a union of part_of (suitable for location of most cells) and has_soma_location (used for neurons). This pattern is designed for safe grouping of cell annotations. Returns: a 2 column table: cell (type) IRIs and cell (type) labels. |
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| { | ||
| ?cell_iri part_of: ?_location_iri . | ||
| } UNION { | ||
| ?cell_iri has_soma_location: ?someValue . | ||
| } |
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| { | |
| ?cell_iri part_of: ?_location_iri . | |
| } UNION { | |
| ?cell_iri has_soma_location: ?someValue . | |
| } | |
| ?cell_iri part_of:|has_soma_location: ?_location_iri . |
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Updating to be more generic.
My aim is a generic cells by type/location query. The default option with no location does depend on all cell types being part of some anatomical entity though. I think would be OK to add this at the root of CL. Note that bodily fluids and excreta are anatomical entities (Can add that request to CL).