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Calling variants with frequency lower than 1%

Status: Open.

#81 In Illumina/Pisces;

· fa-vio opened on Oct 25, 2024

Is there any filtering required on Gemini output?

Status: Open.

#80 In Illumina/Pisces;

· BrettLiddell opened on Mar 14, 2024

Confused with the last version releases

Status: Open.

#79 In Illumina/Pisces;

· Manuel-DominguezCBG opened on Feb 20, 2024

How to limit chr to 1-22,XY?

Status: Open.

#76 In Illumina/Pisces;

· hfl112 opened on Oct 30, 2023

Can I disable the SB flag when not used?

Status: Open.

#75 In Illumina/Pisces;

· Manuel-DominguezCBG opened on Sep 26, 2023

WRONG VF FOR LOW FREQUENCY VARIANTS

Status: Open.

#74 In Illumina/Pisces;

· AriadnaColmeneroCobo opened on Jul 4, 2023

Read depth

Status: Open.

#73 In Illumina/Pisces;

· ad2n15 opened on Aug 19, 2022

Scylla taking a very long time to process WES data / getting stuck

Status: Open.

#72 In Illumina/Pisces;

· fmazzarotto opened on Jul 8, 2022

Creating a GenomeSize.xml for a soybean genome

Status: Open.

#69 In Illumina/Pisces;

· brunabavelino opened on Apr 8, 2022

Pisces has different dp and no call？

Status: Open.

#68 In Illumina/Pisces;

· user-tq opened on Mar 7, 2022

“No usable version of the libssl was found” on Linux

Status: Open.

#67 In Illumina/Pisces;

· HEKntg opened on Nov 30, 2021

Can Pisces set the maximum coverage/sequence depth for SNV calling ?

Status: Open.

#66 In Illumina/Pisces;

· ltongyu opened on Jun 24, 2021