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@lucy-dwr lucy-dwr commented Sep 23, 2025

Incorporated recently-released EMP data from EDI. Primary changes are:

  • EMP macro data no longer contain amphipods, so tests and the changelog were updated to reflect that
  • EDI object names (and therefore urls) changed and were updated
  • Some column names in EMP files changed to reflect full Latin names (i.e., genus was no longer abbreviated), so downstream code and the taxa crosswalk were updated to incorporate this
  • EMP non-static monitoring station locations and sampling dates were added to the EMPEZ station inventory

@lucy-dwr lucy-dwr requested a review from sbashevkin September 23, 2025 00:39
# "Americorophium_UnID Adult Macro"
# - All other Macro-missing taxa must be amphipod-related
# (any species or higher grouping within Amphipoda).
testthat::expect_true("Americorophium_UnID Adult Macro" %in% macro_missing)
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Why is "Americorophium_UnID Adult Macro" treated differently from the rest of the amphipods? Wouldn't it be caught in the next test?

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