Version 1.5.2. Fixed the medline_2017_nozip xml field type from `by…

…tea` to `text`. And updated or specified plugin versions in the pom.
JULIELab · Jun 11, 2021 · 584886d · 584886d
1 parent 345778c
commit 584886d
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Showing 2 changed files with 6 additions and 4 deletions.
diff --git a/pom.xml b/pom.xml
@@ -2,7 +2,7 @@
          xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
     <artifactId>costosys</artifactId>
-    <version>1.5.2-SNAPSHOT</version>
+    <version>1.5.2</version>
     <name>Corpus Storage System</name>
     <description>A utility for managing documents stored in a PostgreSQL database. The documents are imported into a
         PostgreSQL DB as full texts with the goal to be able to retrieve the documents by their PubMedID efficiently.
@@ -13,8 +13,9 @@
     <build>
         <plugins>
             <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-assembly-plugin</artifactId>
-                <version>2.2</version>
+                <version>3.3.0</version>
                 <configuration>
                     <descriptors>
                         <descriptor>cli-assembly.xml</descriptor>
@@ -37,6 +38,7 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-jar-plugin</artifactId>
+                <version>3.2.0</version>
                 <configuration>
                     <!-- exclude logback.xml -->
                     <excludes>

diff --git a/src/main/resources/defaultConfiguration.xml b/src/main/resources/defaultConfiguration.xml
@@ -21,7 +21,7 @@
 						 forEach="/PubmedArticleSet/PubmedArticle/MedlineCitation">
 				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
 					   retrieve="true"/>
-				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
+				<field name="xml" type="text" xpath="." returnXMLFragment="true"
 					   retrieve="true"/>
 			</tableSchema>
 			<tableSchema name="medline_2016" forEach="/MedlineCitationSet/MedlineCitation">
@@ -33,7 +33,7 @@
 			<tableSchema name="medline_2016_nozip" forEach="/MedlineCitationSet/MedlineCitation">
 				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
 					   retrieve="true"/>
-				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
+				<field name="xml" type="text" xpath="." returnXMLFragment="true"
 					   retrieve="true"/>
 			</tableSchema>
 			<tableSchema name="pubmed_gzip"