Merge pull request #280 from JULIELab/taxid_filter #106
GitHub Actions / Test Results
failed
Sep 20, 2024 in 0s
2 fail, 2 skipped, 54 pass in 3m 11s
Annotations
github-actions / Test Results
highlightMerging on highlightMerging(de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest) (de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest) failed
gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml [took 0s]
Raw output
No value present
java.util.NoSuchElementException: No value present
at de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest.highlightMerging(EventResponseProcessingServiceTest.java:27)
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/home/runner/.m2/repository/ch/qos/logback/logback-classic/1.2.3/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/home/runner/.m2/repository/org/slf4j/slf4j-nop/1.7.30/slf4j-nop-1.7.30.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder]
Check warning on line 0 in de.julielab.gepi.core.services.GePiDataServiceTest
github-actions / Test Results
writeExcelSummary on writeExcelSummary(de.julielab.gepi.core.services.GePiDataServiceTest) (de.julielab.gepi.core.services.GePiDataServiceTest) failed
gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml [took 0s]
Raw output
java.lang.NullPointerException
at de.julielab.gepi.core.services.GePiDataServiceTest.writeExcelSummary(GePiDataServiceTest.java:86)
08:06:10.238 [main] INFO de.julielab.gepi.core.services.GePiDataService - Creating event statistics Excel file for dataSessionId 1234
08:06:10.240 [main] DEBUG de.julielab.gepi.core.services.GePiDataService - Writing event statistics tsv file to /tmp/gepi/gepi-excel-1234.tsv
Check notice on line 0 in .github
github-actions / Test Results
2 skipped tests found
There are 2 skipped tests, see "Raw output" for the full list of skipped tests.
Raw output
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest ‑ testReorderBipartiteEventResultArguments2 on testReorderBipartiteEventResultArguments2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest ‑ testReorderBipartiteEventResultArguments3 on testReorderBipartiteEventResultArguments3(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
Check notice on line 0 in .github
github-actions / Test Results
58 tests found
There are 58 tests, see "Raw output" for the full list of tests.
Raw output
de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest ‑ highlightMerging on highlightMerging(de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ getTotalNumberOfEvents on getTotalNumberOfEvents(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testAggregationsClosedSearch on testAggregationsClosedSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testAggregationsFulltextSearch on testAggregationsFulltextSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testAggregationsOpenSearch on testAggregationsOpenSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEvents on testClosedSearchEvents(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithEventTypeFilter1 on testClosedSearchEventsWithEventTypeFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithEventTypeFilter2 on testClosedSearchEventsWithEventTypeFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithEventTypeFilter3 on testClosedSearchEventsWithEventTypeFilter3(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithSentenceFilter1 on testClosedSearchEventsWithSentenceFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithSentenceFilter2 on testClosedSearchEventsWithSentenceFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchEventsWithTaxFilter on testClosedSearchEventsWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testClosedSearchWithSentenceParagraphFilter on testClosedSearchWithSentenceParagraphFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testFulltextSearchWithTaxFilter on testFulltextSearchWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testHighlighting on testHighlighting(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearch on testOpenSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchEventWithSectionFilter on testOpenSearchEventWithSectionFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchOnlyBinary on testOpenSearchOnlyBinary(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithEventTypeFilter1 on testOpenSearchWithEventTypeFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithEventTypeFilter2 on testOpenSearchWithEventTypeFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithSentenceFilter1 on testOpenSearchWithSentenceFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithSentenceFilter2 on testOpenSearchWithSentenceFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithSentenceParagraphFilter on testOpenSearchWithSentenceParagraphFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithSentenceParagraphFilter2 on testOpenSearchWithSentenceParagraphFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest ‑ testOpenSearchWithTaxFilter on testOpenSearchWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest ‑ testReorderBipartiteEventResultArguments on testReorderBipartiteEventResultArguments(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest ‑ testReorderBipartiteEventResultArguments2 on testReorderBipartiteEventResultArguments2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest ‑ testReorderBipartiteEventResultArguments3 on testReorderBipartiteEventResultArguments3(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
de.julielab.gepi.core.services.GePiDataServiceTest ‑ testGetPairsWithCommonTarget on testGetPairsWithCommonTarget(de.julielab.gepi.core.services.GePiDataServiceTest)
de.julielab.gepi.core.services.GePiDataServiceTest ‑ writeExcelSummary on writeExcelSummary(de.julielab.gepi.core.services.GePiDataServiceTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ conceptNameNormalization on conceptNameNormalization(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convert on convert(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertGene2AggregateIds on convertGene2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertGeneNames2AggregateIds on convertGeneNames2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertGeneNames2ConceptIds on convertGeneNames2ConceptIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertGeneNames2GeneIdsWithTaxIds on convertGeneNames2GeneIdsWithTaxIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertGo2ConceptId on convertGo2ConceptId(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertPrefixedGene2AggregateIds on convertPrefixedGene2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ convertUp2AggregateIds on convertUp2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getConceptNamesFromDatabase on getConceptNamesFromDatabase(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getConceptNamesFromDatabase2 on getConceptNamesFromDatabase2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getConceptNamesFromDatabase3 on getConceptNamesFromDatabase3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getFamilyAndOrthologyGroupNodeProperties on getFamilyAndOrthologyGroupNodeProperties(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getFamilyAndOrthologyGroupNodeProperties2 on getFamilyAndOrthologyGroupNodeProperties2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getFamilyAndOrthologyGroupNodeProperties3 on getFamilyAndOrthologyGroupNodeProperties3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getFamilyAndOrthologyGroupNodeProperties4 on getFamilyAndOrthologyGroupNodeProperties4(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getGeneInfo on getGeneInfo(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames on getPossibleAggregationConceptNames(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames2 on getPossibleAggregationConceptNames2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames3 on getPossibleAggregationConceptNames3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames4 on getPossibleAggregationConceptNames4(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames5 on getPossibleAggregationConceptNames5(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getPossibleAggregationConceptNames6 on getPossibleAggregationConceptNames6(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getSymbolsFromFamilyConceptNode on getSymbolsFromFamilyConceptNode(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getSymbolsFromFamilyConceptNode2 on getSymbolsFromFamilyConceptNode2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest ‑ getSymbolsFromFamilyConceptNode3 on getSymbolsFromFamilyConceptNode3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceTest ‑ determineIdTypes on determineIdTypes(de.julielab.gepi.core.services.GeneIdServiceTest)
de.julielab.gepi.core.services.GeneIdServiceTest ‑ mapIdentifierToPrefix on mapIdentifierToPrefix(de.julielab.gepi.core.services.GeneIdServiceTest)
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