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Update changelog
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khituras committed Nov 17, 2022
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# Changelog

## v2.6.0 (17/11/2022)
- [**enhancement**] Add an annotation remover. [#154](https://github.com/JULIELab/jcore-base/issues/154)
- [**enhancement**] Add a truncation size parameter to PMC XML multipliers [#153](https://github.com/JULIELab/jcore-base/issues/153)

#### New components

- [**new component**] Add GNP Multiplier for PMC DB Reader [#152](https://github.com/JULIELab/jcore-base/issues/152)
- [**new component**] Add GNP multipliers for XMI and XML DB multiplier readers [#150](https://github.com/JULIELab/jcore-base/issues/150)
- [**new component**] Add a GNormPlus UIMA component [#147](https://github.com/JULIELab/jcore-base/issues/147)
- [**enhancement**] Allow regular expression feature value filters for EntityConsumer [#146](https://github.com/JULIELab/jcore-base/issues/146)
- [**new component**] Add reader for NLM-Gene [#145](https://github.com/JULIELab/jcore-base/issues/145)
- [**bug**] Fix a bug where half of the DBMultiplierReader IDs were not actually processed [#144](https://github.com/JULIELab/jcore-base/issues/144)
- [**new component**] Add an MMAX2 reader. [#136](https://github.com/JULIELab/jcore-base/issues/136)
- [**new component**] Add GNormPlus BioC XML reader [#131](https://github.com/JULIELab/jcore-base/issues/131)
- [**new component**] Add a GNormPlus BioC Writer [#129](https://github.com/JULIELab/jcore-base/issues/129)
- [**new component**] Add a PMC DB Reader [#128](https://github.com/JULIELab/jcore-base/issues/128)
- [**new component**] Add a consumer to write relations to Neo4j [#113](https://github.com/JULIELab/jcore-base/issues/113)
- [**new component**] Add an embedding writer [#102](https://github.com/JULIELab/jcore-base/issues/102)
- [**new component**] Add a Flair embedding adding component [#101](https://github.com/JULIELab/jcore-base/issues/101)
- [**new component**] Add a FLAIR NER component [#100](https://github.com/JULIELab/jcore-base/issues/100)

#### General Enhancements

- [**enhancement**] Add an annotation remover. [#154](https://github.com/JULIELab/jcore-base/issues/154)
- [**enhancement**] Add a truncation size parameter to PMC XML multipliers [#153](https://github.com/JULIELab/jcore-base/issues/153)
- [**enhancement**] Allow regular expression feature value filters for EntityConsumer [#146](https://github.com/JULIELab/jcore-base/issues/146)
- [**enhancement**] Add H2-based annotation source for AnnotationAdder [#138](https://github.com/JULIELab/jcore-base/issues/138)
- [**enhancement**] Add a feature-based format to the annotation adder [#137](https://github.com/JULIELab/jcore-base/issues/137)
- [**new component**] Add an MMAX2 reader. [#136](https://github.com/JULIELab/jcore-base/issues/136)
- [**enhancement**] Let GNP BioC writer add Gene annotations. [#134](https://github.com/JULIELab/jcore-base/issues/134)
- [**enhancement**] Implement max XMI ID retrieval for the BioC GNormPlus Reader [#133](https://github.com/JULIELab/jcore-base/issues/133)
- [**new component**] Add GNormPlus BioC XML reader [#131](https://github.com/JULIELab/jcore-base/issues/131)
- [**enhancement**] Add a mechanism to avoid mirror subset reset for updated JeDIS document whose text hasn't changed [#130](https://github.com/JULIELab/jcore-base/issues/130)
- [**new component**] Add a GNormPlus BioC Writer [#129](https://github.com/JULIELab/jcore-base/issues/129)
- [**new component**] Add a PMC DB Reader [#128](https://github.com/JULIELab/jcore-base/issues/128)
- [**enhancement**] PMCReader: Add option to omit bibliographical references [#127](https://github.com/JULIELab/jcore-base/issues/127)

#### Bug Fixes

- [**bug**] Fix a bug where half of the DBMultiplierReader IDs were not actually processed [#144](https://github.com/JULIELab/jcore-base/issues/144)
- [**bug**] ESConsumer: Fix bugs with cache index when resource file is updated [#126](https://github.com/JULIELab/jcore-base/issues/126)
- [**bug**] Fix Bug in JSBD where Cut Away Types can still be included in the begin of a sentence. [#125](https://github.com/JULIELab/jcore-base/issues/125)
- [**bug**] JSBD: Fix bug that occurs when cut away types and sentence delimiter types are given [#121](https://github.com/JULIELab/jcore-base/issues/121)

#### Miscellaneous Changes

- [**closed**] Map payloads to features for AnnotationAdder [#124](https://github.com/JULIELab/jcore-base/issues/124)
- [**closed**] ES Consumer: Provide persistent Map and Addon terms providers [#123](https://github.com/JULIELab/jcore-base/issues/123)
- [**bug**] JSBD: Fix bug that occurs when cut away types and sentence delimiter types are given [#121](https://github.com/JULIELab/jcore-base/issues/121)
- [**closed**] Add a flow controller that creates a flow based on a CAS annotation [#120](https://github.com/JULIELab/jcore-base/issues/120)
- [**closed**] JCoreOverlapIndex: Return the list instead of a stream [#117](https://github.com/JULIELab/jcore-base/issues/117)
- [**closed**] lingpipe gazetteer: fix offset issues [#116](https://github.com/JULIELab/jcore-base/issues/116)
- [**new component**] Add a consumer to write relations to Neo4j [#113](https://github.com/JULIELab/jcore-base/issues/113)
- [**new component**] Add an embedding writer [#102](https://github.com/JULIELab/jcore-base/issues/102)
- [**new component**] Add a Flair embedding adding component [#101](https://github.com/JULIELab/jcore-base/issues/101)
- [**new component**] Add a FLAIR NER component [#100](https://github.com/JULIELab/jcore-base/issues/100)

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