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Estimated time to review: small

Summary of changes:

  • added automatic generation of plot of best fitness per generation for the GA run
  • added automatic generation of plot of auxin concentration for XPP cell at (336,56) over time for the best performing set of parameters

How to veriffy:

  • Run and see how it goes! You can also call the plotting functions after each generation to verify more quickly.

…me of GA and auxin over time in oscillation zone for best performing parameters
@Jannetty Jannetty requested review from afu5 and navyacodes December 18, 2025 22:15
@Jannetty Jannetty added the enhancement New feature or request label Dec 18, 2025
self.filename = filename
self.population = []
self.param_names = AUX_SYN_DEG_EXPORT_PARAM_NAMES
self.cleanup = True
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I added this so I can turn off the automatic deletion of files for troubleshooting. Here the automatic deletion of files is on; setting this to False removes the automatic deletion of files.

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@navyacodes navyacodes left a comment

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Looks good! :)

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I think it should be good now :) Sorry about the confusion!

@Jannetty Jannetty merged commit 5741a39 into jain/genetic-algorithm Dec 19, 2025
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3 participants