Add list of version of pubmed-to-gse endpoint#28
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR introduces the
/pubmed-to-gse-flatendpoint, which returns GEO accessions of datasets associated with a list of PubMed IDs as a list rather than a dictionary. The motivation for adding this endpoint is the need to call ELink individually for every input PubMed ID. The new endpoint reduces latency by requiring only 1 ELink call regardless of input size.The only change in this PR is the addition of the
/pubmed-to-gse-flatendpoint, since theDatasetLinkerinterface already supports this use case.