This is the Johnson's lab in Johns Hopkins University who developed the NonEquilibrium Reaction-Diffusion Self-assembly Simulator (NERDSS).
JohnsonBiophysicsLab
Margaret Johnson Lab at the Johns Hopkins University Department of Biophysics
- 5 followers
- United States of America
- https://sites.krieger.jhu.edu/johnson-lab/
- margaret.johnson@jhu.edu
Popular repositories Loading
-
ionerdss
ionerdss PublicForked from mjohn218/ionerdss
Python analysis and visualization tools for NERDSS
-
NERDSS
NERDSS PublicForked from mjohn218/NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
C++ 2
-
-
simulariumio
simulariumio PublicForked from simularium/simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
Python
-
membrane-selects-symmetric-growth-si
membrane-selects-symmetric-growth-si PublicThis repository contains the supporting source code for graphing, analytical, and numerical calculations related to the continuum membrane model by Dr. Margaret E Johnson lab, JHU.
Jupyter Notebook
-
FormatConvert
FormatConvert PublicUtility script for converting between file formats in NERDSS and ioNERDSS
Python
Repositories
Showing 10 of 11 repositories
- munc13-cluster Public
model of recruitment and clustering on the membrane. Python solves ODES, samples parameters to optimize loss function, agreement to experiment.
JohnsonBiophysicsLab/munc13-cluster’s past year of commit activity - membrane-selects-symmetric-growth-si Public
This repository contains the supporting source code for graphing, analytical, and numerical calculations related to the continuum membrane model by Dr. Margaret E Johnson lab, JHU.
JohnsonBiophysicsLab/membrane-selects-symmetric-growth-si’s past year of commit activity - DNA_protein_models Public
Models to simulate protein binding to specific and nonspceific DNA, forming protein dimers and oligomers.
JohnsonBiophysicsLab/DNA_protein_models’s past year of commit activity - OscillatorOptimization Public Forked from jonathanfischer97/OscillatorOptimization
Julia package for optimizing oscillatory biological systems using Quality Diversity evolutionary algorithms
JohnsonBiophysicsLab/OscillatorOptimization’s past year of commit activity - simulariumio Public Forked from simularium/simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
JohnsonBiophysicsLab/simulariumio’s past year of commit activity
Top languages
Loading…
Most used topics
Loading…