More flexible BAM reader.#18

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d-laub wants to merge 4 commits intomainfrom

feat/bam-read-length-option

Commits on Dec 29, 2024

feat: option to use corrections other than +4/-5 from BAMs.
d-laub
committed

Commits on Jan 3, 2025

feat: adds read count method and mapping quality threshold for BAM reader.
d-laub
committed

Commits on Jan 4, 2025