Bump actions/checkout from 6.0.3 to 7.0.1

.github/workflows/cmake-checks.yaml

@@ -24,7 +24,7 @@ jobs:
     name: CMake format check using gersemi
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Install gersemi
         run: pipx install gersemi~=0.25
       - name: Run gersemi

.github/workflows/docker.yaml

@@ -41,7 +41,7 @@ jobs:
       packages: write  # Required by actions/build-push-action
     steps:
       - name: Checkout repository
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
 
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@d7f5e7f509e45cec5c76c4d5afdd7de93d0b3df5  # v4.1.0

.github/workflows/general-checks.yaml

@@ -19,7 +19,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - run: rm -rf vendor
       - name: REUSE Compliance Check
         uses: fsfe/reuse-action@676e2d560c9a403aa252096d99fcab3e1132b0f5  # v6.0.0
@@ -29,7 +29,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Spell Check Repo
         uses: crate-ci/typos@bee27e3a4fd1ea2111cf90ab89cd076c870fce14  # v1.48.0
 
@@ -38,23 +38,23 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - run: ./test/trailing_spaces.py --Werror $(git ls-files ':!vendor' ':!*.h5')
 
   newlines-check:
     name: Newlines check
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - run: ./test/newline_at_eof.py --Werror $(git ls-files ':!vendor' ':!*.h5')
 
   trufflehog-scan:
     name: Secrets check
     runs-on: ubuntu-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           fetch-depth: 0
       - name: Secret Scanning

.github/workflows/ini-checks.yaml

@@ -21,7 +21,7 @@ jobs:
     name: INI lint using validator
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/setup-go@924ae3a1cded613372ab5595356fb5720e22ba16  # v6.5.0
         with:
           cache: false

.github/workflows/markdown-checks.yaml

@@ -21,6 +21,6 @@ jobs:
     name: Markdown lint using markdownlint-cli2
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - run: rm -rf vendor
       - uses: DavidAnson/markdownlint-cli2-action@ded1f9488f68a970bc66ea5619e13e9b52e601cd  # v23.2.0

.github/workflows/python-checks.yaml

@@ -21,7 +21,7 @@ jobs:
     name: Python format using black
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Install dependencies
         run: |
           pipx install black~=25.11
@@ -33,7 +33,7 @@ jobs:
     name: Python lint using pylint
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Install dependencies
         run: |
           pipx install pylint~=4.0

.github/workflows/scorecard.yaml

@@ -39,7 +39,7 @@ jobs:
 
     steps:
       - name: "Checkout code"
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
 

.github/workflows/shell-checks.yaml

@@ -21,6 +21,6 @@ jobs:
     name: Shell lint using shellcheck
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Run ShellCheck
         uses: ludeeus/action-shellcheck@00cae500b08a931fb5698e11e79bfbd38e612a38  # 2.0.0

.github/workflows/tests-macos.yaml

@@ -55,9 +55,9 @@ jobs:
       checks: write  # Required by mikepenz/action-junit-report
     steps:
       - name: Checkout built branch
-        uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - run: brew install google-benchmark googletest hdf5-mpi
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: pdidev/pdi
           ref: 1.9.2
@@ -92,7 +92,7 @@ jobs:
           cmake --build build
           cmake --install build --prefix $inih_ROOT
           rm -rf build
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: kokkos/kokkos
           ref: 5.0.1

.github/workflows/tests-ubuntu.yaml

@@ -38,7 +38,7 @@ jobs:
   cpp-format:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: jidicula/clang-format-action@654a770daa28443dd111d133e4083e21c1075674  # v4.18.0
         with:
           clang-format-version: '22'
@@ -47,7 +47,7 @@ jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Prefer 'if defined'/'if !defined' over 'ifdef'/'ifndef'
         run: if grep -RE "(ifdef|ifndef)" $(git ls-files '*.[ch]pp' ':!vendor'); then exit 1; fi
       - name: Find modifications of Kokkos reserved macros
@@ -60,7 +60,7 @@ jobs:
     container:
       image: ghcr.io/maison-de-la-simulation/heraclespp:main
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: google/googletest
           ref: v1.17.0
@@ -71,7 +71,7 @@ jobs:
             -S googletest
           cmake --build googletest/build
           cmake --install googletest/build --prefix opt/gtest
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           path: heraclespp
       - run: |
@@ -80,7 +80,7 @@ jobs:
             -S heraclespp/vendor/inih
           cmake --build heraclespp/vendor/inih/build
           cmake --install heraclespp/vendor/inih/build --prefix opt/inih
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: google/benchmark
           ref: v1.9.4
@@ -105,7 +105,7 @@ jobs:
     env:
       NVCC_WRAPPER_DEFAULT_COMPILER: g++-13
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: kokkos/kokkos
           ref: 5.0.1
@@ -136,7 +136,7 @@ jobs:
     env:
       CXX: hipcc
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: kokkos/kokkos
           ref: 5.0.1
@@ -165,7 +165,7 @@ jobs:
     container:
       image: ghcr.io/maison-de-la-simulation/heraclespp:main
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           repository: kokkos/kokkos
           ref: 5.0.1
@@ -203,7 +203,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-serial
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -228,7 +228,7 @@ jobs:
     permissions:
       checks: write  # Required by mikepenz/action-junit-report
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -273,7 +273,7 @@ jobs:
     permissions:
       checks: write  # Required by mikepenz/action-junit-report
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -315,7 +315,7 @@ jobs:
     permissions:
       checks: write  # Required by mikepenz/action-junit-report
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -355,7 +355,7 @@ jobs:
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-cuda
       NVCC_WRAPPER_DEFAULT_COMPILER: g++-13
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -389,7 +389,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-hip
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -421,7 +421,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-serial
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -461,7 +461,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-serial
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -493,7 +493,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-serial
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt
@@ -525,7 +525,7 @@ jobs:
       inih_ROOT: ${{github.workspace}}/opt/inih
       Kokkos_ROOT: ${{github.workspace}}/opt/kokkos-serial
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c  # v8.0.1
         with:
           path: opt

.github/workflows/yaml-checks.yaml

@@ -25,7 +25,7 @@ jobs:
     name: YAML lint using yamllint
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10  # v6.0.3
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
       - name: Install yamllint
         run: pipx install yamllint~=1.37
       - run: |