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apply rules BEFORE checking for transformation #292

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apply rules BEFORE checking for transformation #292

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06347f6
apply rules BEFORE checking for transformation
drbergman Sep 7, 2024
4492e15
after a cell converts, apply the new rules to that cell
drbergman Sep 10, 2024
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11 changes: 8 additions & 3 deletions core/PhysiCell_cell.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -313,14 +313,16 @@ void Cell::update_motility_vector( double dt_ )

void Cell::advance_bundled_phenotype_functions( double dt_ )
{
// New March 2022
// perform transformations
standard_cell_transformations( this,this->phenotype,dt_ );

// New March 2023 in Version 1.12.0
// call the rules-based code to update the phenotype
if( PhysiCell_settings.rules_enabled )
{ apply_ruleset( this ); }

// New March 2022
// perform transformations
standard_cell_transformations( this,this->phenotype,dt_ );

if( get_single_signal(this,"necrotic") > 0.5 )
{
double rupture = this->phenotype.volume.rupture_volume;
Expand Down Expand Up @@ -1168,6 +1170,9 @@ void Cell::convert_to_cell_definition( Cell_Definition& cd )
* phenotype.mechanics.relative_maximum_adhesion_distance;
}
}

if( PhysiCell_settings.rules_enabled )
{ apply_ruleset( this ); } // don't wait for the start of the next phenotype update to apply the rules to this cell
return;
}

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