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GSMM as an alternative to GEM

Status: Open.

#39 In MetabolicAtlas/standard-GEM;

· mihai-sysbio opened on Oct 26, 2023

Clarify naming convention for model files

Status: Open.

#38 In MetabolicAtlas/standard-GEM;

· mihai-sysbio opened on Oct 26, 2023

Support for repositories with multiple GEMs (f. ex. strain collections)

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In MetabolicAtlas/standard-GEM;

· famosab opened on Nov 2, 2022

Automated tests via github actions for repositories generated from this template

Status: Open.

#36 In MetabolicAtlas/standard-GEM;

· famosab opened on Oct 28, 2022

template for gh pages landing page in /docs on master

Status: Open.

#31 In MetabolicAtlas/standard-GEM;

· mihai-sysbio opened on Jul 28, 2021

Revise templates in .github

Status: Open.

#29 In MetabolicAtlas/standard-GEM;

· mihai-sysbio opened on Oct 29, 2020

Encourage the use of dedicated fields rather than semantic overloading

Status: Open.

#27 In MetabolicAtlas/standard-GEM;

· draeger opened on Sep 15, 2020

Focus of the next release

Status: Open.

#23 In MetabolicAtlas/standard-GEM;

· mihai-sysbio opened on Sep 8, 2020

Documentation of model development

workflowworkflow for curating GEM-type reposworkflow for curating GEM-type repos

Status: Open.

#20 In MetabolicAtlas/standard-GEM;

· sulheim opened on Aug 27, 2020

External standard subsystem for each reaction to make it comparable from different GEMs

discussionDiscussion for the optimal solutionsDiscussion for the optimal solutions

Status: Open.

#19 In MetabolicAtlas/standard-GEM;

· hongzhonglu opened on Aug 24, 2020

Encourage the use of COMBINE archives as exchange format for the model and its execution

modelFormatRequests for model file formatsRequests for model file formats

Status: Open.

#18 In MetabolicAtlas/standard-GEM;

· draeger opened on Aug 13, 2020

Consider using more powerful templating, e.g., cookiecutter

Status: Open.

#11 In MetabolicAtlas/standard-GEM;

· Midnighter opened on Aug 13, 2020