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40 changes: 19 additions & 21 deletions README.html → README.md
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<html><pre>
This code accompanies the publication:

Schmidt-Hieber C, Hausser M (2013)
Cellular mechanisms of spatial navigation in the medial entorhinal
cortex.
Nat Neurosci 16:325--331
Schmidt-Hieber C, Hausser M (2013)
Cellular mechanisms of spatial navigation in the medial entorhinal cortex.
*Nat Neurosci* 16:325–331

Send comments to c.schmidt-hieber_at_ucl.ac.uk

Currently, only the compartmental stellate cell model [1] is included.
Currently, only the compartmental stellate cell model [1] is included.
I will add the oi and can model implementations at a later time.

INSTALLATION
# INSTALLATION

Install NEURON, ideally with Python support:
Install NEURON, ideally with Python support:
http://www.neuron.yale.edu

USAGE
# USAGE

1. Compile the mechanism files in the mod directory:
1. Compile the mechanism files in the mod directory:
$ nrnivmodl nrn/mod

2. Run the demo:
2. Run the demo:
$ ./x86_64/special demo/test_rin.hoc -

or

$ python demo/test_rin.py

The demo runs with 11 injected current pulses from -0.05 to .45 nA in
steps of 0.05. When the demo is finished (takes a few seconds) you
should have a graph that looks like this:
The demo runs with 11 injected current pulses from -0.05 to .45 nA in steps of 0.05. When the demo is finished (takes a few seconds) you should have a graph that looks like this:

<img src="./screenshot.png" alt="screenshot">
![screenshot](./screenshot.png)

[1] Morphology based on:
D. L. Garden, P. D. Dodson, C. O'Donnell, M. D. White, M. F. Nolan
Tuning of synaptic integration in the medial entorhinal cortex to the
organization of grid cell firing fields.
Neuron 60, 875 (2008).
</pre></html>
[1] Morphology based on:
D. L. Garden, P. D. Dodson, C. O'Donnell, M. D. White, M. F. Nolan
Tuning of synaptic integration in the medial entorhinal cortex to the organization of grid cell firing fields.
*Neuron* 60, 875 (2008).

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2025-07-09: Converted README to Markdown.