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Patch 3 #6

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Patch 3 #6

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7ad19cc
Realign codeblock backticks
wibeasley Feb 3, 2016
d417dcf
Remove extra "restart pymol" step
wibeasley Feb 3, 2016
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29 changes: 12 additions & 17 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -57,10 +57,12 @@ Copy script from [this link](https://github.com/MooersLab/EasyPyMOL/blob/master/
```shell
ls *.py
```

Paste the following horizontal script on the command line of the top or external gui:
```shell
fetch 1lw9, async=0; run roundview.py; roundview 0,1
```

You should see the following in the command history window of the top gui:
```shell
set_view (1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,-155.2,35.1,11.5,9.7,122.3,188.0,-20.0);
Expand All @@ -71,7 +73,7 @@ Type the following to see the default format from get_view.
get_view
```

Which looks easier to add to a horizontal scrpt with other commands on the same line?
Which looks easier to add to a horizontal script with other commands on the same line?

#### More advanced ways to install

Expand Down Expand Up @@ -105,33 +107,26 @@ on-line documentation are available with
sys.path.append('/Path/To/roundview')
run /Path/To/roundview.py
```
For example:
```py
For example:
```py
import sys
sys.path.append('/Users/blaine-mooers/Scripts/Scripts_PyMOL/')
run /Users/blaine-mooers/Scripts/Scripts_PyMOL/roundview.py
```
Restart pymol. You should see soemthing like the following in the command history window if your path to the script is correct.
```py
PyMOL>import sys
PyMOL>sys.path.append('/Users/blaine-mooers/Scripts/Scripts_PyMOL/')
PyMOL>run /Users/blaine-mooers/Scripts/Scripts_PyMOL/roundview.py
```

Restart pymol. You should see soemthing like the following in the command history window if your path to the script is correct.
```py
Restart pymol. You should see something like the following in the command history window if your path to the script is correct.
```py
PyMOL>import sys
PyMOL>sys.path.append('/Users/blaine-mooers/Scripts/Scripts_PyMOL/')
PyMOL>run /Users/blaine-mooers/Scripts/Scripts_PyMOL/roundview.py
```



Type "roundview" on either command line. You should get back something like this if no molecule is loaded:
```py

Type "roundview" on either command line. You should get back something like this if no molecule is loaded:
```py
set_view (1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,-50.0,0.0,0.0,0.0,40.0,100.0,-20.0);
```
```py

```py
PyMOL>import sys
PyMOL>sys.path.append('/Users/blaine-mooers/Scripts/Scripts_PyMOL/')
PyMOL>run /Users/blaine-mooers/Scripts/Scripts_PyMOL/roundview.py
Expand Down