optimise dev env: use pre-built binaries and align with setup.py#1410
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qin-yu wants to merge 2 commits intoMouseLand:mainfrom
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optimise dev env: use pre-built binaries and align with setup.py#1410qin-yu wants to merge 2 commits intoMouseLand:mainfrom
qin-yu wants to merge 2 commits intoMouseLand:mainfrom
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…etup.py Switch from pip to conda-forge for complex dependencies to avoid compilation failures. Update Python to >=3.9,<3.12 and add missing packages. Enables development setup on HPC clusters and systems without build tools.
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Hi @mrariden, this PR updates
environment.ymlto make the development setup more robust.pip install cellpose[gui]can fail on HPC systems because PyQt and other compiled dependencies are built from source. I encountered this on the Crick HPC cluster, and similar issues have appeared in past discussions. I therefore moved as many compiled dependencies as possible to conda-forge to rely on pre-built binaries and avoid toolchain-related failures. This also fixesimagecodecsbuild failures on macOS.superqt.setup.pyand the README.Tested on Francis Crick Institute HPC cluster (Rocky Linux, no build tools) and macOS (Apple Silicon).