Commit changes suggested by Wei

doc/ReadMe

@@ -31,6 +31,8 @@ Input
 4. Monthly salinity climatology at T1534 Gaussian grids, interpolated from 1 degree Levitus surface salinity climatology.
 5. Surface mask fix file for ½, ¼ and 1/12 lat/lon grids
 
+Note: All fix files are compressed with gzip, and need to be uncompressed with gunzip before running
+
 Output
 
 RTG-like SST files

jobs/JNSST

@@ -5,6 +5,13 @@ set -xa
 date
 export PS4='$SECONDS + '
 
+#################################################
+# get work directory
+################################################
+export DATA=${DATA:-${DATAROOT:?}/${jobid:?}}   # temporary running directory
+mkdir -p $DATA
+cd $DATA
+
 ####################################
 # Specify NET and RUN Name and model
 ####################################
@@ -33,12 +40,6 @@ export COMOUTwmo=${COMOUTwmo:-${COMOUT}/wmo}
 export COMOUTgempak=${COMOUTgempak:-${COMOUT}/gempak}
 mkdir -p $COMOUT $COMOUTwmo $COMOUTgempak
 
-#################################################
-# get work directory
-################################################
- export DATA=${DATA:-${DATAROOT:?}/${jobid:?}}   # temporary running directory
- mkdir -p $DATA
- cd $DATA
 #################################################
 # Specify job's execution areas (directory paths)
 #################################################

scripts/exnsst.sh.ecf

@@ -88,7 +88,14 @@ rm -f $mailbody
 #
   for SDIR in $COMINgdas/${cyc} ${COMINgdas/$PDY/$PDYm1}/${cyc}
   do
-     iceanl_name=$CDUMP.$cycle.seaice.5min.blend.grb
+     if [ $SFCIO = "nemsio" ] ; then
+       iceanl_name=$CDUMP.$cycle.seaice.5min.blend.grb
+     elif [ $SFCIO="ncio" ] ; then
+       iceanl_name=atmos/$CDUMP.$cycle.seaice.5min.blend.grb
+     else
+       echo "invalid sfcio"
+       exit
+     fi
      if [ -s $SDIR/$iceanl_name ] ; then
         ln -fs $SDIR/$iceanl_name iceanl
         if [ $SDIR != $COMINgdas/${cyc} ]; then