Zero-diff changes to sfc updates, to speed up v17 #4659
+210
−85
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| set -x | ||
|
|
||
| ############################################################### | ||
| # Source FV3GFS workflow modules | ||
| source "${HOMEgfs}/dev/ush/load_modules.sh" run | ||
| status=$? | ||
| if [[ ${status} -ne 0 ]]; then | ||
| exit "${status}" | ||
| fi | ||
|
|
||
| export job="sfcanlr" | ||
| export jobid="${job}.$$" | ||
|
|
||
| ############################################################### | ||
| # Execute the JJOB | ||
| "${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_SFCANL_REGRID" | ||
| status=$? | ||
|
|
||
| exit "${status}" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| # for now, leave environment and config files un-changed. | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "sfcanl" -c "base sfcanl" | ||
|
|
||
| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
| # Ignore possible spelling error (nothing is misspelled) | ||
| # shellcheck disable=SC2153 | ||
| GDATE=$(date --utc -d "${PDY} ${cyc} - ${assim_freq} hours" +%Y%m%d%H) | ||
| export GDATE | ||
|
|
||
| BKG_RUN="gdas" | ||
| if [[ "${RUN}" == "gcafs" || "${RUN}" == "gcdas" ]]; then | ||
| BKG_RUN="gcdas" | ||
| fi | ||
|
|
||
| RUN=${BKG_RUN} YMD=${GDATE:0:8} HH=${GDATE:8:2} declare_from_tmpl -rx \ | ||
| COMIN_OBS_PREV:COM_OBS_TMPL \ | ||
| COMIN_ATMOS_RESTART_PREV:COM_ATMOS_RESTART_TMPL | ||
|
|
||
| YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ | ||
| COMIN_OBS:COM_OBS_TMPL \ | ||
| COMIN_ATMOS_ANALYSIS:COM_ATMOS_ANALYSIS_TMPL \ | ||
| COMIN_SNOW_ANALYSIS:COM_SNOW_ANALYSIS_TMPL | ||
|
|
||
| YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ | ||
| COMOUT_ATMOS_RESTART:COM_ATMOS_RESTART_TMPL | ||
|
|
||
| RUN="enkfgdas" MEMDIR="ensstat" YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ | ||
| COMIN_ATMOS_ENKF_ANALYSIS_STAT:COM_ATMOS_ANALYSIS_TMPL | ||
|
|
||
| mkdir -p "${COMOUT_ATMOS_RESTART}" | ||
|
|
||
| # Use CFP to stage and save files in parallel | ||
| export USE_CFP=YES | ||
|
|
||
| ############################################################### | ||
| # Run relevant script | ||
|
|
||
| ${SFCANALSH:-${SCRgfs}/exglobal_atmos_sfcanl_gcycle.sh} && true | ||
| export err=$? | ||
| if [[ ${err} -ne 0 ]]; then | ||
| err_exit | ||
| fi | ||
|
|
||
| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]]; then | ||
| cat "${pgmout}" | ||
| fi | ||
|
|
||
| ########################################## | ||
| # Remove the Temporary working directory | ||
| ########################################## | ||
| cd "${DATAROOT}" || true | ||
| if [[ "${KEEPDATA}" == "NO" ]]; then | ||
| rm -rf "${DATA}" | ||
| fi | ||
|
|
||
| exit 0 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change | ||||
|---|---|---|---|---|---|---|
| @@ -0,0 +1,53 @@ | ||||||
| #! /usr/bin/env bash | ||||||
|
|
||||||
| ################################################################################ | ||||||
| #### UNIX Script Documentation Block | ||||||
| # . . | ||||||
| # Script name: exglobal_atmos_sfcanl_regrid.sh | ||||||
| # Script description: Regrids land increments generated by GSI | ||||||
| # | ||||||
| # Author: Russ Treadon Org: NCEP/EMC Date: 2021-12-13 | ||||||
| # | ||||||
| # Abstract: Regrids land increments generated by GSI | ||||||
| # | ||||||
| # $Id$ | ||||||
| # | ||||||
| # Attributes: | ||||||
| # Language: POSIX shell | ||||||
| # | ||||||
| ################################################################################ | ||||||
|
|
||||||
| # Dependent Scripts and Executables | ||||||
| REGRIDSH=${REGRIDSH:-"${USHgfs}/regrid_gsiSfcIncr_to_tile.sh"} | ||||||
|
|
||||||
| if [[ "${DO_GSISOILDA}" == "YES" ]]; then | ||||||
|
|
||||||
| # Collect the dates in the window to update surface restarts | ||||||
|
There was a problem hiding this comment. [shfmt] reported by reviewdog 🐶
Suggested change
|
||||||
| soilinc_fhrs=("${assim_freq}") # increment file at middle of window | ||||||
| LFHR="${assim_freq}" | ||||||
| if [[ "${DOIAU:-}" == "YES" ]]; then # Update surface restarts at beginning of window | ||||||
| half_window=$((assim_freq / 2)) | ||||||
| soilinc_fhrs+=("${half_window}") | ||||||
| LFHR=-1 | ||||||
| fi | ||||||
|
|
||||||
| export COMIN_SOIL_ANALYSIS_MEM="${COMIN_ATMOS_ENKF_ANALYSIS_STAT}" | ||||||
| export COMOUT_ATMOS_ANALYSIS_MEM="${COMIN_ATMOS_ANALYSIS}" | ||||||
| export CASE_IN="${CASE_ENS}" | ||||||
| export CASE_OUT="${CASE}" | ||||||
| export OCNRES_OUT="${OCNRES}" | ||||||
| export LFHR | ||||||
|
|
||||||
| "${REGRIDSH}" | ||||||
| export err=$? | ||||||
| if [[ ${err} -ne 0 ]]; then | ||||||
| err_exit "Soil increment file was not regridded correctly!" | ||||||
| fi | ||||||
|
|
||||||
| fi | ||||||
|
|
||||||
| ################################################################################ | ||||||
|
|
||||||
| exit "${err}" | ||||||
|
|
||||||
| ################################################################################ | ||||||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
[shfmt] reported by reviewdog 🐶