Source set_strict rather than call it as a function

dev/job_cards/rocoto/prep.sh

@@ -170,10 +170,10 @@ fi
 # Create or Copy prepbufr, prepbufr.acft_profiles, nsstbufr files
 # Do not fail on external errors
 if [[ ${MAKE_PREPBUFR:-"YES"} == "YES" ]]; then
-    unset_strict
+    source "${USHglobal}/unset_strict.sh"
     "${HOMEobsproc}/jobs/JOBSPROC_GLOBAL_PREP" && true
     export err=$?
-    set_strict
+    source "${USHglobal}/set_strict.sh"
     if [[ ${err} -ne 0 ]]; then
         err_exit "JOBSPROC_GLOBAL_PREP job failed, ABORT!"
     fi

dev/jobs/JGDAS_AERO_ANALYSIS_GENERATE_BMATRIX

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGDAS_ATMOS_CHGRES_FORENKF

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGDAS_ATMOS_GEMPAK

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export GRIB=${GRIB:-pgrb2f}
 export EXT=""

dev/jobs/JGDAS_ATMOS_GEMPAK_META_NCDC

@@ -14,6 +14,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 # Now set up GEMPAK/NTRANS environment
 

dev/jobs/JGDAS_ATMOS_VERFOZN

@@ -13,6 +13,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 #############################################
 #  determine PDY and cyc for previous cycle

dev/jobs/JGDAS_ATMOS_VERFRAD

@@ -13,6 +13,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 #############################################
 #  determine PDY and cyc for previous cycle

dev/jobs/JGDAS_ENKF_POST

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGDAS_FIT2OBS

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGEFS_WAVE_STAT

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 source "${USHglobal}/wave_domain_grid.sh"
 
 # Set COM Paths

dev/jobs/JGEFS_WAVE_STAT_PNT

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 # Set COM Paths
 

dev/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export OMP_NUM_THREADS=${OMP_NUM_THREADS:-1}
 

dev/jobs/JGFS_ATMOS_CYCLONE_GENESIS

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the exglobal script
@@ -43,10 +46,10 @@ export JYYYY=${PDY:0:4}
 ##############################################
 
 # Do not fail on errors or unassigned variables in external code
-unset_strict
+source "${USHglobal}/unset_strict.sh"
 "${SCRIPTens_tracker}/exgfs_tc_genesis.sh" && true
 export err=$?
-set_strict
+source "${USHglobal}/set_strict.sh"
 if [[ ${err} -ne 0 ]]; then
     err_exit
 fi

dev/jobs/JGFS_ATMOS_CYCLONE_TRACKER

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export COMPONENT="atmos"
 

dev/jobs/JGFS_ATMOS_FBWIND

@@ -15,6 +15,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export COMPONENT="atmos"
 

dev/jobs/JGFS_ATMOS_FSU_GENESIS

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Define COM and Data directories

dev/jobs/JGFS_ATMOS_GEMPAK

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ############################################
 # Set up model and cycle specific variables

dev/jobs/JGFS_ATMOS_GEMPAK_META

@@ -15,6 +15,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ###############################################
 # Set MP variables

dev/jobs/JGFS_ATMOS_GEMPAK_NCDC_UPAPGIF

@@ -13,6 +13,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export MP_PULSE=0
 export MP_TIMEOUT=2000

dev/jobs/JGFS_ATMOS_GEMPAK_PGRB2_SPEC

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export COMPONENT="atmos"
 export EXT=""

dev/jobs/JGFS_ATMOS_PGRB2_SPEC_NPOESS

@@ -15,6 +15,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 export OMP_NUM_THREADS=${OMP_NUM_THREADS:-1}
 

dev/jobs/JGFS_ATMOS_POSTSND

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ########################################
 # Runs GFS BUFR SOUNDINGS

dev/jobs/JGFS_ATMOS_VERIFICATION

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ###############################################################
 ## Abstract:
@@ -38,11 +41,11 @@ done
 if [[ "${RUN_GRID2GRID_STEP1}" == "YES" || "${RUN_GRID2OBS_STEP1}" == "YES" || "${RUN_PRECIP_STEP1}" == "YES" ]]; then
     # Override the -e in VERIF_GLOBALSH's shebang and un-export SHELLOPTS
     # TODO: clean up the verif-global script so it does not raise false-positive errors
-    unset_strict
+    source "${USHglobal}/unset_strict.sh"
     export -n SHELLOPTS
     bash -x "${VERIF_GLOBALSH}"
     err=$?
-    set_strict
+    source "${USHglobal}/set_strict.sh"
     if [[ ${err} -ne 0 ]]; then
         exit "${err}"
     fi

dev/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE

@@ -12,6 +12,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE

@@ -11,6 +11,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_AERO_ANALYSIS_VARIATIONAL

@@ -12,6 +12,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ANALYSIS_STATS

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ARCHIVE_TARS

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 if [[ "${DO_WAVE}" == "YES" ]]; then
     source "${EXPDIR}/config.wave"
     source "${USHglobal}/wave_domain_grid.sh"
@@ -104,10 +107,10 @@ fi
 
 # Do not export shell opts to the bash scripts in the htar/hsi wrappers
 export -n SHELLOPTS
-unset_strict
+source "${USHglobal}/unset_strict.sh"
 ${GLOBALARCHIVESH:-${SCRglobal}/exglobal_archive_tars.py}
 export err=$?
-set_strict
+source "${USHglobal}/set_strict.sh"
 if [[ ${err} -ne 0 ]]; then
     err_exit "failed to archive the COM structure"
 fi

dev/jobs/JGLOBAL_ARCHIVE_VRFY

@@ -10,6 +10,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE

@@ -11,6 +11,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT

@@ -12,6 +12,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE

@@ -11,6 +11,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF

@@ -11,6 +11,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS

@@ -11,6 +11,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script

dev/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL

@@ -12,6 +12,9 @@ source "${HOMEglobal}/ush/jjob_standard_vars.sh"
 #{% endif %}
 
 source "${USHglobal}/jjob_shell_setup.sh"
+# Set strict mode which will exit on error or undefined variable
+# and exit on error in a pipeline (e.g. if a command in "cmd | cmd2" fails)
+source "${USHglobal}/set_strict.sh"
 
 ##############################################
 # Set variables used in the script