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Fix bug in proteinsw_qp.cu. Thanks, mmmovania #34

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Fix bug in proteinsw_qp.cu. Thanks, mmmovania #34

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361c225
Fix bug in proteinsw_qp.cu. Thanks, mmmovania
r-barnes Feb 6, 2020
5acdd3a
Make proteinsw_qp a compilation target
r-barnes Feb 6, 2020
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9 changes: 4 additions & 5 deletions examples/proteinsw/CMakeLists.txt
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Original file line number Diff line number Diff line change
@@ -1,8 +1,7 @@
nvbio_module(proteinsw)

addsources(
proteinsw.cu
)

cuda_add_executable(proteinsw ${proteinsw_srcs})
cuda_add_executable(proteinsw proteinsw.cu)
target_link_libraries(proteinsw nvbio zlibstatic lz4 crcstatic ${SYSTEM_LINK_LIBRARIES})

cuda_add_executable(proteinsw_qp proteinsw_qp.cu)
target_link_libraries(proteinsw_qp nvbio zlibstatic lz4 crcstatic ${SYSTEM_LINK_LIBRARIES})
2 changes: 1 addition & 1 deletion examples/proteinsw/proteinsw_qp.cu
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Original file line number Diff line number Diff line change
Expand Up @@ -211,7 +211,7 @@ int main(int argc, char* argv[])
// and execute the batch alignment, on a GPU device
aln::batch_alignment_score(
aln::make_gotoh_aligner<aln::LOCAL,aln::TextBlockingTag>( scoring ),
make_concatenated_string_set( n_strings, thrust::make_constant_iterator<uint32>(0), (const uint32*)raw_pointer( d_pattern_offsets ) ),
make_concatenated_string_set( n_strings, (const uint8*)raw_pointer( d_pattern_strings ), (const uint32*)raw_pointer( d_pattern_offsets ) ),
make_concatenated_string_set( n_strings, (const uint8*)raw_pointer( d_text_strings ), (const uint32*)raw_pointer( d_text_offsets ) ),
sinks.begin(),
aln::DeviceThreadBlockScheduler<128,1>() );
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