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Update nifti_to_png.py #11

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Update nifti_to_png.py #11

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4 changes: 2 additions & 2 deletions ndmg/utils/nifti_to_png.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,9 @@

warnings.simplefilter("ignore")
from argparse import ArgumentParser
from scipy.misc import imsave
import nibabel as nb
import os
import imageio


def convert(indir, outdir, verbose=False):
Expand Down Expand Up @@ -64,7 +64,7 @@ def convert(indir, outdir, verbose=False):
for slices in range(dat.shape[2]):
if verbose:
print("Saving slice:", slices)
imsave(
imageio.imsave(
dirname + "/%04d.png" % slices,
dat[:, :, slices, count].astype("float32").T,
)
Expand Down