Modify the Install dependencies #68
Annotations
3 errors and 9 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/[email protected]
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Install dependencies
Process completed with exit code 2.
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Set up R
No such keg: /opt/homebrew/Cellar/[email protected]
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install R package dependencies
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R
qpdf 11.9.1 is already installed and up-to-date.
To reinstall 11.9.1, run:
brew reinstall qpdf
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Set up R
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R
checkbashisms 2.25.1 is already installed and up-to-date.
To reinstall 2.25.1, run:
brew reinstall checkbashisms
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Set up R
ghostscript 10.04.0 is already installed and up-to-date.
To reinstall 10.04.0, run:
brew reinstall ghostscript
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