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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 909 457

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 225 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 276 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 59

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 318 repositories
  • CohortConstructor Public
    OHDSI/CohortConstructor’s past year of commit activity
    R 1 Apache-2.0 0 38 4 Updated Jan 14, 2025
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    OHDSI/PatientLevelPrediction’s past year of commit activity
    HTML 189 90 36 (2 issues need help) 2 Updated Jan 14, 2025
  • OhdsiReportGenerator Public

    Code to extract data from the OHDSI results structure and generate plots, presentations and reports

    OHDSI/OhdsiReportGenerator’s past year of commit activity
    R 0 0 0 0 Updated Jan 14, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 225 Unlicense 75 223 11 Updated Jan 14, 2025
  • MIMIC Public

    MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

    OHDSI/MIMIC’s past year of commit activity
    Python 75 Apache-2.0 25 21 3 Updated Jan 14, 2025
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 1 Apache-2.0 0 8 2 Updated Jan 14, 2025
  • DatabaseConnector Public

    An R package for connecting to databases using JDBC.

    OHDSI/DatabaseConnector’s past year of commit activity
    R 55 83 30 (1 issue needs help) 2 Updated Jan 14, 2025
  • EmpiricalCalibration Public

    An R package for performing empirical calibration of observational study estimates

    OHDSI/EmpiricalCalibration’s past year of commit activity
    R 10 9 2 0 Updated Jan 14, 2025
  • MethodEvaluation Public

    An R package for the evaluation of estimation methods

    OHDSI/MethodEvaluation’s past year of commit activity
    R 8 5 2 0 Updated Jan 14, 2025
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 15 Apache-2.0 15 1 2 Updated Jan 14, 2025
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