Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 5 additions & 5 deletions docs/generalPurposeProcesses.md
Original file line number Diff line number Diff line change
Expand Up @@ -104,8 +104,8 @@ Processes related to segmentation are listed in this section.

| Code | OSIPI name| Alternative names|Notation|Description|Reference|
| -- | -- | -- | -- | -- | -- |
| G.SE1.001 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> Create binary mask | -- | -- | This process creates a binary segmentation mask on a given data set using a specified segmentation method. <br /> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> Segmentation method (select from [segmentation methods](#Segmentation methods)) <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE1.002 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> Apply binary mask | -- | -- | This process masks a given data set with a given mask. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} <br /> **Output**: <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"} | --|
| G.SE1.001 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="CreateBinaryMask"></a> Create binary mask | -- | -- | This process creates a binary segmentation mask on a given data set using a specified segmentation method. <br /> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> Segmentation method (select from [segmentation methods](#Segmentation methods)) <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE1.002 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="ApplyBinaryMask"></a> Apply binary mask | -- | -- | This process masks a given data set with a given mask. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} <br /> **Output**: <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"} | --|
| G.SE1.999 | <a id="not listed SE1"></a> Method not listed | -- | -- |This is a custom free-text item, which can be used if a method of interest is not listed. Please state a literature reference and request the item to be added to the lexicon for future usage. | -- |


Expand All @@ -114,8 +114,8 @@ Processes related to segmentation are listed in this section.
| -- | -- | -- | -- | -- | -- |
| G.SE2.001 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="Freehand"></a> Freehand | -- | -- | Manual freehand drawing of contours. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"} <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | --|
| G.SE2.002 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="Threshold"></a> Threshold | -- | -- | This method selects all input data with values in a specified range between lower and upper threshold. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Lower threshold (Q.GE1.010)](quantities.md#L){:target="_blank"}, <br /> [Upper threshold (Q.GE1.011)](quantities.md#U){:target="_blank"} <br /> **Output**: <br/> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE2.003 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> Region growing | -- | -- | This method grows a region from selected seeds with values between the lower and upper value threshold in the neighborhood of the seeds. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Seeds (Q.SE1.004)](quantities.md#Seeds){:target="_blank"}, <br /> [Lower threshold (Q.GE1.010)](quantities.md#L){:target="_blank"}, <br /> [Upper threshold (Q.GE1.011)](quantities.md#U){:target="_blank"} <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE2.004 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> *K*-means clustering | -- | -- | This method partitions the input data in a number of clusters using the *K*-means clustering algorithm and selects the cluster with the ith index as binary mask. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Number of *K*-Means clusters (Q.SE1.005)](quantities.md#N_kMeans){:target="_blank"}, <br /> [*i* (Q.GE1.003)](quantities.md#index){:target="_blank"} <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE2.003 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="RegionGrowing"></a> Region growing |G.SE2.003 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> Region growing | -- | -- | This method grows a region from selected seeds with values between the lower and upper value threshold in the neighborhood of the seeds. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Seeds (Q.SE1.004)](quantities.md#Seeds){:target="_blank"}, <br /> [Lower threshold (Q.GE1.010)](quantities.md#L){:target="_blank"}, <br /> [Upper threshold (Q.GE1.011)](quantities.md#U){:target="_blank"} <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE2.004 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="KMeansClustering"></a> *K*-means clustering | -- | -- | This method partitions the input data in a number of clusters using the *K*-means clustering algorithm and selects the cluster with the ith index as binary mask. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, <br /> [Number of *K*-Means clusters (Q.SE1.005)](quantities.md#N_kMeans){:target="_blank"}, <br /> [*i* (Q.GE1.003)](quantities.md#index){:target="_blank"} <br /> **Output**: <br /> [Binary mask (Q.SE1.001)](quantities.md#BinMask){:target="_blank"} | -- |
| G.SE2.999 | <a id="not listed SE2"></a> Method not listed | -- | -- |This is a custom free-text item, which can be used if a method of interest is not listed. Please state a literature reference and request the item to be added to the lexicon for future usage. | -- |


Expand Down Expand Up @@ -147,7 +147,7 @@ Uncertainty estimation and statistics processes

| Code | OSIPI name| Alternative names|Notation|Description|Reference|
| -- | -- | -- | -- | -- | -- |
| G.AV1.001 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id=""></a> Calculate Average | -- | CalcAverage | This process returns the average of input data according to a specified averaging method. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, Averaging method (select from [uncertainty estimation and statistics processes](#Uncertainty estimation and statistics processes)) e.g. [Calc $\bar{x}$ (G.US1.001)](#CalcMeanSample) <br/> **Output:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}| -- |
| G.AV1.001 <button class="md-button md-button--hyperlink">COPY LINK</button> | <a id="CalculateAverage"></a> Calculate Average | -- | CalcAverage | This process returns the average of input data according to a specified averaging method. <br/> **Input:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}, Averaging method (select from [uncertainty estimation and statistics processes](#Uncertainty estimation and statistics processes)) e.g. [Calc $\bar{x}$ (G.US1.001)](#CalcMeanSample) <br/> **Output:** <br /> [Data (Q.GE1.002)](quantities.md#Data){:target="_blank"}| -- |
| G.AV1.999 | <a id="not listed AV1"></a> Method not listed | -- | -- |This is a custom free-text item, which can be used if a method of interest is not listed. Please state a literature reference and request the item to be added to the lexicon for future usage. | -- |


Expand Down
Loading