Add an AnIML HPLC-DAD export/import test case.

openchrom/plugins/net.openchrom.wsd.converter.supplier.animl/src/net/openchrom/wsd/converter/supplier/animl/PathResolver.java

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+/*******************************************************************************
+ * Copyright (c) 2013, 2024 Lablicate GmbH.
+ *
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ *******************************************************************************/
+package net.openchrom.wsd.converter.supplier.animl;
+
+import java.io.IOException;
+import java.net.URL;
+
+import org.eclipse.core.runtime.FileLocator;
+import org.eclipse.core.runtime.IPath;
+import org.eclipse.core.runtime.Path;
+import org.eclipse.core.runtime.Platform;
+import org.osgi.framework.Bundle;
+
+public class PathResolver {
+
+	/**
+	 * Returns a absolute path of the specified Folder. For example
+	 * TESTDATA_IMPORT_EMPTY as an absolute Path:
+	 * $PluginPath$/testData/files/file.animl
+	 *
+	 * @param string
+	 * @return String absolutePath
+	 */
+	public static String getAbsolutePath(String string) {
+
+		Bundle bundle = Platform.getBundle(Activator.getContext().getBundle().getSymbolicName());
+		IPath path = new Path(string);
+		URL url = FileLocator.find(bundle, path, null);
+		try {
+			return FileLocator.resolve(url).getPath().toString();
+		} catch(IOException e) {
+			e.printStackTrace();
+		}
+		return null;
+	}
+}

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/.classpath

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+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-17"/>
+	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="output" path="bin"/>
+</classpath>

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/.gitignore

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+/bin/

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/.project

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+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>net.openchrom.wsd.converter.supplier.animl.fragment.test</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/.settings/org.eclipse.core.resources.prefs

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+eclipse.preferences.version=1
+encoding/<project>=utf8

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/.settings/org.eclipse.jdt.core.prefs

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+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=17
+org.eclipse.jdt.core.compiler.compliance=17
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=17

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/META-INF/MANIFEST.MF

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+Manifest-Version: 1.0
+Automatic-Module-Name: net.openchrom.wsd.converter.supplier.animl.fragment.test
+Bundle-ManifestVersion: 2
+Bundle-Name: AnIML WSD Test
+Bundle-SymbolicName: net.openchrom.wsd.converter.supplier.animl.fragment.test
+Bundle-Version: 1.5.0.qualifier
+Bundle-Vendor: OpenChrom
+Fragment-Host: net.openchrom.wsd.converter.supplier.animl;bundle-version="1.5.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-17
+Require-Bundle: org.junit;bundle-version="4.11.0",
+ org.eclipse.chemclipse.rcp.app.test;bundle-version="0.9.0",
+ com.sun.xml.bind.jaxb-core;bundle-version="4.0.1",
+ com.sun.xml.bind.jaxb-impl;bundle-version="4.0.1",
+ org.glassfish.hk2.osgi-resource-locator;bundle-version="1.0.3"

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/build.properties

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+source.. = src/
+output.. = bin/
+bin.includes = META-INF/,\
+               .

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/src/net/openchrom/wsd/converter/supplier/animl/AllTests.java

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+/*******************************************************************************
+ * Copyright (c) 2015, 2024 Lablicate GmbH.
+ *
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ * Dr. Alexander Kerner - initial API and implementation
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package net.openchrom.wsd.converter.supplier.animl;
+
+import org.eclipse.chemclipse.rcp.app.test.TestAssembler;
+
+import junit.framework.Test;
+import junit.framework.TestSuite;
+
+public class AllTests {
+
+	public static Test suite() {
+
+		TestAssembler testAssembler = new TestAssembler(Activator.getContext().getBundle().getBundleContext().getBundles());
+		TestSuite suite = new TestSuite("Run all tests.");
+		String bundleAndPackageName = "net.openchrom.wsd.converter.supplier.animl";
+		testAssembler.assembleTests(suite, bundleAndPackageName, bundleAndPackageName, "*_Test"); // Unit
+		testAssembler.assembleTests(suite, bundleAndPackageName, bundleAndPackageName, "*_ITest"); // Integration
+		return suite;
+	}
+}

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/src/net/openchrom/wsd/converter/supplier/animl/TestPathHelper.java

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+/*******************************************************************************
+ * Copyright (c) 2020, 2024 Lablicate GmbH.
+ *
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package net.openchrom.wsd.converter.supplier.animl;
+
+public class TestPathHelper extends PathResolver {
+
+	/*
+	 * IMPORT
+	 */
+	public static final String TESTFILE_IMPORT_DEMO = "testData/files/import/Demo.ocb";
+	/*
+	 * EXPORT
+	 */
+	public static final String DIRECTORY_EXPORT_TEST = "testData/files/export";
+}

openchrom/tests/net.openchrom.wsd.converter.supplier.animl.fragment.test/src/net/openchrom/wsd/converter/supplier/animl/converter/ChromatogramImportExport_ITest.java

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+/*******************************************************************************
+ * Copyright (c) 2011, 2024 Lablicate GmbH.
+ *
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package net.openchrom.wsd.converter.supplier.animl.converter;
+
+import java.io.File;
+import java.util.ArrayList;
+
+import org.eclipse.chemclipse.processing.core.IProcessingInfo;
+import org.eclipse.chemclipse.processing.core.IProcessingMessage;
+import org.eclipse.chemclipse.wsd.converter.chromatogram.ChromatogramConverterWSD;
+import org.eclipse.chemclipse.wsd.model.core.IChromatogramWSD;
+import org.eclipse.core.runtime.NullProgressMonitor;
+import org.junit.Test;
+
+import net.openchrom.wsd.converter.supplier.animl.TestPathHelper;
+
+import junit.framework.TestCase;
+
+public class ChromatogramImportExport_ITest extends TestCase {
+
+	protected IChromatogramWSD chromatogramImport;
+	protected IChromatogramWSD chromatogram;
+	protected String pathImport;
+	protected String pathExport;
+	protected File fileImport;
+	protected File fileExport;
+	protected String extensionPointImport;
+	protected String extensionPointExportReimport;
+
+	@Override
+	protected void setUp() {
+
+		/*
+		 * Import
+		 */
+		pathImport = TestPathHelper.getAbsolutePath(TestPathHelper.TESTFILE_IMPORT_DEMO);
+		extensionPointImport = "org.eclipse.chemclipse.xxd.converter.supplier.chemclipse";
+		/*
+		 * Export/Reimport
+		 */
+		File directory = new File(TestPathHelper.DIRECTORY_EXPORT_TEST);
+		directory.mkdir();
+		pathExport = TestPathHelper.getAbsolutePath(TestPathHelper.DIRECTORY_EXPORT_TEST) + File.separator + "Test.animl";
+		extensionPointExportReimport = "net.openchrom.wsd.converter.supplier.animl.chromatogram";
+		/*
+		 * Import the chromatogram.
+		 */
+		fileImport = new File(this.pathImport);
+		IProcessingInfo<IChromatogramWSD> processingInfoImport = ChromatogramConverterWSD.getInstance().convert(fileImport, this.extensionPointImport, new NullProgressMonitor());
+		chromatogramImport = processingInfoImport.getProcessingResult();
+		for(IProcessingMessage message : processingInfoImport.getMessages()) {
+			System.out.println(message.getMessage());
+		}
+		/*
+		 * Export the chromatogram.
+		 */
+		fileExport = new File(this.pathExport);
+		IProcessingInfo<File> processingInfoExport = ChromatogramConverterWSD.getInstance().convert(fileExport, chromatogramImport, this.extensionPointExportReimport, new NullProgressMonitor());
+		fileExport = processingInfoExport.getProcessingResult();
+		for(IProcessingMessage message : processingInfoExport.getMessages()) {
+			System.out.println(message.getMessage());
+		}
+		/*
+		 * Reimport the exported chromatogram.
+		 */
+		chromatogramImport = null;
+		IProcessingInfo<IChromatogramWSD> processingInfo = ChromatogramConverterWSD.getInstance().convert(fileExport, this.extensionPointExportReimport, new NullProgressMonitor());
+		chromatogram = processingInfo.getProcessingResult();
+		for(IProcessingMessage message : processingInfo.getMessages()) {
+			System.out.println(message.getMessage());
+		}
+	}
+
+	@Override
+	protected void tearDown() throws Exception {
+
+		pathImport = null;
+		pathExport = null;
+		fileImport = null;
+		fileExport.delete();
+		fileExport = null;
+		chromatogramImport = null;
+		chromatogram = null;
+		super.tearDown();
+	}
+
+	@Test
+	public void testReimport() {
+
+		assertNotNull(chromatogram);
+		assertEquals(4950, chromatogram.getNumberOfScans());
+		assertEquals(280f, new ArrayList<>(chromatogram.getWavelengths()).get(0));
+	}
+}