Update OEKG (Scenario Bundles) to v2#2070
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…. study to s. bundle OEO concept
…tion with has_part (BFO_0000051)
…listing purpose from triple store to pur SPARQL query instead of python rdfLib . This speeds up the response time a lot
- Fix all outdated oep (oeo, oekg) urls to new format - Update to OEKG v2: add OBO namespace, add missing classes, replace all OEKG refs to new OEO concepts (only OEKG id persists)
- Introduce filter to find all scenarios for a bundle by bundle id - This replaces the previous rdflib approach and is reausable e.g. when query for all factsheets
…uery instead of rdflib to seep up response time
- views.py: simplify view and fix bundle edit view form data - samepsaces.py: bin OBO and SKOS namespaces
- Fix dateTIme format not used in literal - Fix Scenario acronym is lost when updating scenario - Fix - Enhance factsheet by io view to get data from OEKG v2 structure and easy code readability
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The ci fails due to some SSL cert issues. Locally test succeeded. I need to merge this branch is have to go ahead and merge it with failing tests. |
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Summary of the discussion
We reworked the OEKG as during v1 development we introduced inconsitencies which made propper validation and evaluation of contents complicated as incorrect concepts have been assinged to some nodes of the OEKG.
This PR implements the requirements identified:
Type of change (CHANGELOG.md)
Features
Changes
Bugs
Removed
Documentation updates
Workflow checklist
Automation
Closes #2069
Closes #2087
Closes #2092
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