Additions 202603

Applications/relax2/agriMRI/BBCH_scale_faba_bean.csv

@@ -0,0 +1,72 @@
+code;description
+00;Dry seed
+01;Beginning of seed imbibition
+03;Seed imbibition complete
+05;Radicle emerged from seed
+07;Shoot emerged from seed (plumule apparent)
+08;Shoot growing towards soil surface
+09;Emergence: shoot emerges through soil surface
+10;Pair of scale leaves visible (may be eaten or lost)
+11;First leaf unfolded
+12;2 leaves unfolded
+13;3 leaves unfolded
+14;4 leaves unfolded
+15;5 leaves unfolded
+16;6 leaves unfolded
+17;7 leaves unfolded
+18;8 leaves unfolded
+19;9 or more leaves unfolded
+20;No side shoots
+21;Beginning of side shoot development: first side shoot detectable
+22;2 side shoots detectable
+23;3 side shoots detectable
+24;4 side shoots detectable
+25;5 side shoots detectable
+26;6 side shoots detectable
+27;7 side shoots detectable
+28;8 side shoots detectable
+29;End of side shoot development: 9 or more side shoots detectable
+30;Beginning of stem elongation
+31;One visibly extended internode
+32;2 visibly extended internodes
+33;3 visibly extended internodes
+34;4 visibly extended internodes
+35;5 visibly extended internodes
+36;6 visibly extended internodes
+37;7 visibly extended internodes
+38;8 visibly extended internodes
+39;9 or more visibly extended internodes
+50;Flower buds present, still enclosed by leaves
+51;First flower buds visible outside leaves
+55;First individual flower buds visible outside leaves but still closed
+59;First petals visible, many individual flower buds, still closed
+60;First flowers open
+61;Flowers open on first raceme
+63;Flowers open 3 racemes per plant
+65;Full flowering: flowers open on 5 racemes per plant
+67;Flowering declining
+69;End of flowering
+70;First pods have reached final length ("flat pod")
+71;10% of pods have reached final length
+72;20% of pods have reached final length
+73;30% of pods have reached final length
+74;40% of pods have reached final length
+75;50% of pods have reached final length
+76;60% of pods have reached final length
+77;70% of pods have reached final length
+78;80% of pods have reached final length
+79;Nearly all pods have reached final length
+80;Beginning of ripening: seed green, filling pod cavity
+81;10% of pods ripe, seeds dry and hard
+82;20% of pods ripe, seeds dry and hard
+83;30% of pods ripe and dark, seeds dry and hard
+84;40% of pods ripe and dark, seeds dry and hard
+85;50% of pods ripe and dark, seeds dry and hard
+86;60% of pods ripe and dark, seeds dry and hard
+87;70% of pods ripe and dark, seeds dry and hard
+88;80% of pods ripe and dark, seeds dry and hard
+89;Fully ripe: nearly all pods dark, seeds dry and hard
+93;Stems begin to darken
+95;50% of stems brown or black
+97;Plant dead and dry
+99;Harvested product

Applications/relax2/agriMRI/BBCH_scale_oilseed_rape.csv

@@ -0,0 +1,74 @@
+code;description
+00;Dry seed
+01;Beginning of seed imbibition
+03;Seed imbibition complete
+05;Radicle emerged from seed
+07;Hypocotyl with cotyledons emerged from seed
+08;Hypocotyl with cotyledons growing towards soil surface
+09;Emergence: cotyledons emerge through soil surface
+10;Cotyledons completely unfolded
+11;First leaf unfolded
+12;2 leaves unfolded
+13;3 leaves unfolded
+14;4 leaves unfolded
+15;5 leaves unfolded
+16;6 leaves unfolded
+17;7 leaves unfolded
+18;8 leaves unfolded
+19;9 or more leaves unfolded
+20;No side shoots
+21;Beginning of side shoot development: first side shoot detectable
+22;2 side shoots detectable
+23;3 side shoots detectable
+24;4 side shoots detectable
+25;5 side shoots detectable
+26;6 side shoots detectable
+27;7 side shoots detectable
+28;8 side shoots detectable
+29;End of side shoot development: 9 or more side shoots detectable
+30;Beginning of stem elongation: no internodes ("rosette")
+31;1 visibly extended internode
+32;2 visibly extended internodes
+33;3 visibly extended internodes
+34;4 visibly extended internodes
+35;5 visibly extended internodes
+36;6 visibly extended internodes
+37;7 visibly extended internodes
+38;8 visibly extended internodes
+39;9 or more visibly extended internodes
+50;Flower buds present, still enclosed by leaves
+51;Flower buds visible from above ("green bud")
+52;Flower buds free, level with the youngest leaves
+53;Flower buds raised above the youngest leaves
+55;Individual flower buds (main inflorescence) visible but still closed
+57;Individual flower buds (secondary inflorescences) visible but still closed
+59;First petals visible, flower buds still closed ("yellow bud")
+60;First flowers open
+61;10% of flowers on main raceme open, main raceme elongating
+62;20% of flowers on main raceme open
+63;30% of flowers on main raceme open
+64;40% of flowers on main raceme open
+65;Full flowering: 50% flowers on main raceme open, older petals falling
+67;Flowering declining: majority of petals fallen
+69;End of flowering
+71;10% of pods have reached final size
+72;20% of pods have reached final size
+73;30% of pods have reached final size
+74;40% of pods have reached final size
+75;50% of pods have reached final size
+76;60% of pods have reached final size
+77;70% of pods have reached final size
+78;80% of pods have reached final size
+79;Nearly all pods have reached final size
+80;Beginning of ripening: seed green, filling pod cavity
+81;10% of pods ripe, seeds dark and hard
+82;20% of pods ripe, seeds dark and hard
+83;30% of pods ripe, seeds dark and hard
+84;40% of pods ripe, seeds dark and hard
+85;50% of pods ripe, seeds dark and hard
+86;60% of pods ripe, seeds dark and hard
+87;70% of pods ripe, seeds dark and hard
+88;80% of pods ripe, seeds dark and hard
+89;Fully ripe: nearly all pods ripe, seeds dark and hard
+97;Plant dead and dry
+99;Harvested product

Applications/relax2/agriMRI/BBCH_scale_pea.csv

@@ -0,0 +1,58 @@
+code;description
+00;Dry seed
+01;Beginning of seed imbibition
+03;Seed imbibition complete
+05;Radicle emerged from seed
+07;Shoot breaking through seed coat
+08;Shoot growing towards soil surface, hypocotyl arch visible
+09;Emergence: shoot breaks through soil surface ("cracking stage")
+10;Pair of scale leaves visible
+11;First true leaf (with stipules) unfolded or first tendril developed
+12;2 leaves (with stipules) unfolded or 2 tendrils developed
+13;3 leaves (with stipules) unfolded or 3 tendrils developed
+14;4 leaves (with stipules) unfolded or 4 tendrils developed
+15;5 leaves (with stipules) unfolded or 5 tendrils developed
+16;6 leaves (with stipules) unfolded or 6 tendrils developed
+17;7 leaves (with stipules) unfolded or 7 tendrils developed
+18;8 leaves (with stipules) unfolded or 8 tendrils developed
+19;9 or more leaves (with stipules) unfolded or 9 or more tendrils developed
+30;Beginning of stem elongation
+31;1 visibly extended internode
+32;2 visibly extended internodes
+33;3 visibly extended internodes
+34;4 visibly extended internodes
+35;5 visibly extended internodes
+36;6 visibly extended internodes
+37;7 visibly extended internodes
+38;8 visibly extended internodes
+39;9 or more visibly extended internodes
+51;First flower buds visible outside leaves
+55;First separated flower buds visible outside leaves but still closed
+59;First petals visible, flowers still closed
+60;First flowers open (sporadically within the population)
+61;Beginning of flowering: 10% of flowers open
+62;20% of flowers open
+63;30% of flowers open
+64;40% of flowers open
+65;Full flowering: 50% of flowers open
+67;Flowering declining
+69;End of flowering
+71;10% of pods have reached typical length, juice exudes if pressed
+72;20% of pods have reached typical length, juice exudes if pressed
+73;30% of pods have reached typical length, juice exudes if pressed. Tenderometer value: 80 TE
+74;40% of pods have reached typical length, juice exudes if pressed. Tenderometer value: 95 TE
+75;50% of pods have reached typical length, juice exudes if pressed. Tenderometer value: 105 TE
+76;60% of pods have reached typical length, juice exudes if pressed. Tenderometer value: 115 TE
+77;70% of pods have reached typical length. Tenderometer value: 130 TE
+79;Pods have reached typical size (green ripe), peas fully formed
+81;10% of pods ripe, seeds final colour, dry and hard
+82;20% of pods ripe, seeds final colour, dry and hard
+83;30% of pods ripe, seeds final colour, dry and hard
+84;40% of pods ripe, seeds final colour, dry and hard
+85;50% of pods ripe, seeds final colour, dry and hard
+86;60% of pods ripe, seeds final colour, dry and hard
+87;70% of pods ripe, seeds final colour, dry and hard
+88;80% of pods ripe, seeds final colour, dry and hard
+89;Fully ripe: all pods dry and brown. Seeds dry and hard (dry ripe)
+97;Plants dead and dry
+99;Harvested product

Applications/relax2/agriMRI/BBCH_scale_safflower.csv

@@ -0,0 +1,74 @@
+code;description
+00;Dry seed
+01;Beginning of seed imbibition
+03;Seed imbibition complete
+05;Radicle emerged from seed
+06;Radicle elongated, root hairs and/or side roots visible
+07;Hypocotyl with cotyledons emerged from seed
+08;Hypocotyl with cotyledons growing towards soil surface
+09;Emergence: cotyledons emerge through soil surface
+10;Cotyledons completely unfolded
+11;First leaf unfolded
+12;2 leaves unfolded
+13;3 leaves unfolded
+14;4 leaves unfolded
+15;5 leaves unfolded
+16;6 leaves unfolded
+17;7 leaves unfolded
+18;8 leaves unfolded
+19;9 or more leaves unfolded
+20;No side shoots
+21;Beginning of side shoot development: first side shoot detectable
+22;2 side shoots detectable
+23;3 side shoots detectable
+24;4 side shoots detectable
+25;5 side shoots detectable
+26;6 side shoots detectable
+27;7 side shoots detectable
+28;8 side shoots detectable
+29;End of side shoots development: 9 or more side shoots detectable
+30;Beginning of stem elongation: visibly extended internode n develops between leaf n and leaf n+1
+31;1 visibly extended internode
+32;2 visibly extended internodes
+33;3 visibly extended internodes
+34;4 visibly extended internodes
+35;5 visibly extended internodes
+36;6 visibly extended internodes
+37;7 visibly extended internodes
+39;9 or more visibly extended internodes
+50;Flower buds present, still enclosed by leaves
+51;Flower buds visible from above ("green bud")
+52;Flower buds free, level with the youngest leaves
+53;Flower buds raised above the youngest leaves
+55;Individual flower buds (main inflorescence) visible but still closed
+57;Individual flower buds (secondary inflorescences) visible but still closed
+59;First petals visible, flower buds still closed ("yellow bud")
+60;First flowers open
+61;10% of flowers on main raceme open, main raceme elongating
+62;20% of flowers on main raceme open
+63;30% of flowers on main raceme open
+64;40% of flowers on main raceme open
+65;Full flowering: 50% of flowers on main raceme open, older petals falling
+67;Flowering declining: majority of petals fallen
+69;End of flowering
+71;10% of pods have reached final size
+72;20% of pods have reached final size
+73;30% of pods have reached final size
+74;40% of pods have reached final size
+75;50% of pods have reached final size
+76;60% of pods have reached final size
+77;70% of pods have reached final size
+78;80% of pods have reached final size
+79;Nearly all pods have reached final size
+80;Beginning of ripening: seed green, filling pod cavity
+81;10% of pods ripe, seeds dark and hard
+82;20% of pods ripe, seeds dark and hard
+83;30% of pods ripe, seeds dark and hard
+84;40% of pods ripe, seeds dark and hard
+85;50% of pods ripe, seeds dark and hard
+86;60% of pods ripe, seeds dark and hard
+87;70% of pods ripe, seeds dark and hard
+88;80% of pods ripe, seeds dark and hard
+89;Fully ripe: nearly all pods ripe, seeds dark and hard
+97;Plant dead and dry
+99;Harvested product

Applications/relax2/agriMRI/BBCH_scale_sunflower.csv

@@ -0,0 +1,50 @@
+code;description
+00;Dry seed (achene)
+01;Beginning of seed imbibition
+03;Seed imbibition complete
+05;Radicle emerged from seed
+06;Radicle elongated, root hairs developing
+07;Hypocotyl with cotyledons emerged from seed
+08;Hypocotyl with cotyledons growing towards soil surface
+09;Emergence: cotyledons emerge through soil surface
+10;Cotyledons completely unfolded
+12;2 leaves (first pair) unfolded
+14;4 leaves (second pair) unfolded
+15;5 leaves unfolded
+16;6 leaves unfolded
+17;7 leaves unfolded
+18;8 leaves unfolded
+19;9 or more leaves unfolded
+30;Beginning of stem elongation
+31;1 visibly extended internode
+32;2 visibly extended internodes
+33;3 visibly extended internodes
+34;4 visibly extended internodes
+35;5 visibly extended internodes
+36;6 visibly extended internodes
+37;7 visibly extended internodes
+38;8 visibly extended internodes
+39;9 or more visibly extended internodes
+51;Inflorescence just visible between youngest leaves
+53;Inflorescence separating from youngest leaves, bracts distinguishable from foliage leaves
+55;Inflorescence separated from youngest foliage leaf
+57;Inflorescence clearly separated from foliage leaves
+59;Ray florets visible between the bracts, inflorescence still closed
+61;Beginning of flowering: ray florets extended, disc florets visible in outer third of inflorescence
+63;Disc florets in outer third of inflorescence in bloom (stamens and stigmata visible)
+65;Full flowering: disc florets in middle third of inflorescence in bloom (stames and stigmata visible)
+67;Flowering declining: disc florets in inner third of inflorescence in bloom (stames and stigmata visible)
+69;End of flowering: most disc florets have finished flowering, ray florets dry or fallen
+71;Seeds on outer edge of the inflorescence are grey and have reached final size
+73;Seeds on outer third of the inflorescence are grey and have reached final size
+75;Seeds on middle third of the inflorescence are grey and have reached final size
+79;Seeds on inner third of the inflorescence are grey and have reached final size
+80;Beginning of ripening: seeds on outer third of anthocarp black and hard. Back of anthocarp still green
+81;Seeds on outer third of anthocarp dark and hard. Back ofanthocarp still green
+83;Dark of anthocarp yellowish-green, bracts still green. Seeds about 50% dry matter
+85;Seeds on middle third of anthocarp dark and hard. Back of anthocarp yellow, bracts brown edged. Seeds about 60% dry matter
+87;Physiological ripeness: back of the anthocarp yellow. Bracts marbled brown. Seeds about 75–80% dry matter
+89;Fully ripe: seeds on inner third of anthocarp dark and hard. Back of anthocarp brown. Bracts brown. Seeds about 85% dry matter
+92;Over ripe, seeds over 90% dry matter
+97;Plant dead and dry
+99;Harvested product

Applications/relax2/agriMRI/plant_species_library.csv

@@ -1,12 +1,21 @@
 index;common_name;scientific_name;taxonomy;BBCH-scale
-0;Wheat;Triticum;NCBI:txid4564;Cereals
-1;Rice;Oryza sativa;NCBI:txid4530;Rice
-2;Maize;Zea mays;NCBI:txid4577;Maize
-3;Zucchini;Cucurbita pepo subsp. pepo;NCBI:txid3664;Cucurbits
-4;Olive;Olea europaea;NCBI:txid4146;Olive
-5;Grapevine;Vitis vinifera;NCBI:txid29760;Grapevine
-6;Tomato;Solanum lycopersicon;NCBI:txid4081;Solanaceous fruits
-7;Onion;Allium cepa;NCBI:txid4679;Bulb vegetables
-8;Potato;Solanum tuberosum;NCBI:txid4113;Potato
+0;;;;General
+1;Durum wheat;Triticum turgidum subsp. durum;NCBI:txid4567;Cereals
+2;Bread wheat;Triticum aestivum subsp. aestivum;NCBI:txid4565;Cereals
+3;Barley;Hordeum vulgare subsp. vulgare;NCBI:txid112509;Cereals
+4;Rice;Oryza sativa;NCBI:txid4530;Rice
+5;Maize;Zea mays subsp. mays;NCBI:txid381124;Maize
+6;Sunflower;Helianthus annuus;NCBI:txid4232;Sunflower
+7;Oilseed rape;Brassica napus subsp. napus/oleifera;NCBI:txid138011;Oilseed_rape
+8;Safflower;Carthamus tinctorius;NCBI:txid4222;Safflower
 9;Soybean;Glycine max;NCBI:txid3847;Soybean
-10;Lettuce;Lactuca;NCBI:txid4235;Leaf vegetables
+10;Tick bean;Vicia faba subsp. var. minor;NCBI:txid3907;Faba_bean
+11;Chickpea;Cicer arietinum;NCBI:txid3827;Chickpea
+12;Zucchini;Cucurbita pepo subsp. pepo;NCBI:txid3664;Cucurbits
+13;Olive;Olea europaea;NCBI:txid4146;Olive
+14;Grapevine;Vitis vinifera;NCBI:txid29760;Grapevine
+15;Tomato;Solanum lycopersicon;NCBI:txid4081;Solanaceous_fruits
+16;Onion;Allium cepa;NCBI:txid4679;Bulb vegetables
+17;Potato;Solanum tuberosum;NCBI:txid4113;Potato
+18;Soybean;Glycine max;NCBI:txid3847;Soybean
+19;Lettuce;Lactuca;NCBI:txid4235;Leaf_vegetables