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Throw exception on ERROR and terminate TOPP workflow run #210

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Throw exception on ERROR and terminate TOPP workflow run #210

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30d746f
throw exception on failure and terminate
subCode321 Mar 26, 2025
5d49743
Fix for run multiple commands
subCode321 Mar 26, 2025
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1 change: 1 addition & 0 deletions src/workflow/CommandExecutor.py
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Original file line number Diff line number Diff line change
Expand Up @@ -105,6 +105,7 @@ def run_command(self, command: list[str]) -> None:
if stderr or process.returncode != 0:
error_message = stderr.decode().strip()
self.logger.log(f"ERRORS OCCURRED:\n{error_message}", 2)
raise RuntimeError(error_message)

def run_topp(self, tool: str, input_output: dict, custom_params: dict = {}) -> None:
"""
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