Export data as fcs files containing community_id data

[Stein-ErikG]

Hi,

I want to use the community clustering (by vite) to make a set of landmark files for a second map. I could not find the community id in the rds data generated by vite. Is it possible to generate fcs files with this information?

I used the following code to make the fcs files;

rdsfilelist <- list.files("path-to-data/",
full.names = TRUE)

for (i in 1:length(rdsfilelist)){
tempdata <- readRDS(rdsfilelist[i])
data <- rbind(data, tempdata)
}

flow.frame <- as_flowFrame(as.matrix(data))
write_flowFrame(flow.frame, "you_file.fcs")