This is the groupwork for the CMEE program from group 5. This project contains practice of the group work. This groupwork is aimed to practice how to write Python and R script
Python: 3.8.10
R: 3.6.3
Linux kernal: 5.11.0-27-generic
LaTex: pdfTeX 3.14159265-2.6-1.40.20
Python: sys, csv, doctest, pandas, numpy
Author name: Peter (Guancheng) Zeng, Kate Griffin, Junyue Zhang, Kayleigh Greenwood
Email: pz221@ic.ac.uk, kate.griffin21@imperial.ac.uk, jz1621@ic.ac.uk, Kayleigh.Greenwood21@ic.ac.uk
align_seqs_fasta.py is a python script. This script aligns two DNA sequences and saves the best alignment along with its corresponding score in a single text file. The external input should be provided, for example: align_seqs_fasta.py seq1.fasta seq2.fasta . The result will be stored to the results folder
align_seqs_better.py is a python script. This script aligns two DNA sequences and saves the best alignment along with its corresponding score in a single text file. The external input should be provided, for example: align_seqs_better.py seq1.fasta seq2.fasta . The result will be stored to the results folder. The align_seqs_better.py will output several best align ig their alignment score are the same
grp_oaks_debugme.py is a python script. The script carefully compares the looping and the list comprehension methods for the two tasks, which are to find oak tree species names and get names in upper case. This script used to have bugs, but they have been debugged
get_TreeHeight.py is a python script which calculates tree heights for all trees in the data. The script has been generalised so that it can be used for other datasets.
get_TreeHeight.r is an R script which calculates tree heights for all trees in the data. The script has been generalised so that it can used for other datasets.
run_get_TreeHeight.sh is a shell script used to execute get_TreeHeight.py and get_TreeHeight.r
TAutoCorr.R is an R script which is used to find out if there is an autocorrelation in Florida weather
TAutoCorr.tex is a LaTeX file, which is the report of the result from TAutoCorr.R