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@PixelgenTechnologies

Pixelgen Technologies

The Single Cell Spatial Proteomics Company

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  1. pixelator pixelator Public

    A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

    Python 21 5

  2. pixelatorR pixelatorR Public

    Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)

    R 10 1

  3. pixelgen-MPX-paper pixelgen-MPX-paper Public

    Analysis code for the "Molecular Pixelation: Single-cell spatial proteomics by sequencing" paper

    R 2

  4. nf-core-pixelator nf-core-pixelator Public

    Forked from nf-core/pixelator

    Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

    Nextflow 2

  5. proxiome-analysis-template proxiome-analysis-template Public template

    R 2

  6. scanpy scanpy Public

    Forked from scverse/scanpy

    Single-cell analysis in Python. Scales to >1M cells.

    Python 1

Repositories

Showing 10 of 15 repositories
  • pixelator Public

    A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

    PixelgenTechnologies/pixelator's past year of commit activity
    Python 21 MIT 5 0 4 Updated Sep 18, 2026
  • pixelatorES Public

    Generate interactive HTML summaries, quality control metrics, and data visualizations for multi-sample Proxiome experiments.

    PixelgenTechnologies/pixelatorES's past year of commit activity
    R 1 GPL-2.0 0 0 1 Updated Sep 18, 2026
  • proxiome-analysis-template Public template
    PixelgenTechnologies/proxiome-analysis-template's past year of commit activity
    R 2 GPL-2.0 0 0 3 Updated Sep 18, 2026
  • pixelatorR Public

    Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)

    PixelgenTechnologies/pixelatorR's past year of commit activity
    R 10 GPL-2.0 1 0 5 Updated Sep 17, 2026
  • pixelator-core Public

    Rust library, cli and python bindings for performance critical parts of pixelator

    PixelgenTechnologies/pixelator-core's past year of commit activity
    Rust 0 MIT 0 0 2 Updated Sep 14, 2026
  • pixelgen-PNA-paper Public

    Protein interactome studies as nanoscale spatial networks encompassing single cells by the Proximity Network Assay

    PixelgenTechnologies/pixelgen-PNA-paper's past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Aug 31, 2026
  • nf-core-pixelator Public Forked from nf-core/pixelator

    Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

    PixelgenTechnologies/nf-core-pixelator's past year of commit activity
    Nextflow 2 MIT 13 0 0 Updated Jun 4, 2026
  • test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    PixelgenTechnologies/test-datasets's past year of commit activity
    0 MIT 530 0 0 Updated Dec 4, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    PixelgenTechnologies/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,129 0 0 Updated May 5, 2025
  • adjusted-local-assortativity-paper Public

    Analysis code for the paper "Using Adjusted Local Assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance"

    PixelgenTechnologies/adjusted-local-assortativity-paper's past year of commit activity
    Jupyter Notebook 0 GPL-2.0 0 0 0 Updated Jul 4, 2024
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