Merge pull request #516 from Proteobench/Title-location

Title location
Proteobench · Dec 19, 2024 · 7777e2b · 7777e2b
2 parents b2cbe3c + cfe07fb
commit 7777e2b
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Showing 10 changed files with 30 additions and 28 deletions.
diff --git a/webinterface/pages/2_Quant_LFQ_ion_DDA.py b/webinterface/pages/2_Quant_LFQ_ion_DDA.py
@@ -13,10 +13,9 @@
 
 class StreamlitUI:
     def __init__(self):
-        print("page loaded")
         self.variables_dda_quant: VariablesDDAQuant = VariablesDDAQuant()
         self.texts: Type[WebpageTexts] = WebpageTexts
-        self.texts.ShortMessages.title = "DDA Ion quantification"
+
         self.user_input: Dict[str, Any] = dict()
 
         pbb.proteobench_page_config()
@@ -56,7 +55,7 @@ def _main_page(self) -> None:
         )
 
         with tab_results_all:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -66,7 +65,7 @@ def _main_page(self) -> None:
 
         # Tab 2: Submission Details
         with tab_submission_details:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
 
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
@@ -77,7 +76,7 @@ def _main_page(self) -> None:
 
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
 
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
@@ -88,7 +87,7 @@ def _main_page(self) -> None:
 
         # Tab 3: Results (New Submissions)
         with tab_results_new:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -99,7 +98,7 @@ def _main_page(self) -> None:
 
         # Tab 4: Public Submission
         with tab_public_submission:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(

diff --git a/webinterface/pages/3_Quant_LFQ_ion_DIA_AIF.py b/webinterface/pages/3_Quant_LFQ_ion_DIA_AIF.py
@@ -17,7 +17,7 @@ class StreamlitUI:
     def __init__(self):
         self.variables_dia_quant: VariablesDIAQuant = VariablesDIAQuant()
         self.texts: Type[WebpageTexts] = WebpageTexts
-        self.texts.ShortMessages.title = "DIA Ion quantification - AIF"
+
         self.user_input: Dict[str, Any] = dict()
 
         pbb.proteobench_page_config()
@@ -60,7 +60,7 @@ def _main_page(self) -> None:
 
         # Tab 1: Results (All Data)
         with tab_results_all:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -70,7 +70,7 @@ def _main_page(self) -> None:
 
         # Tab 2: Submission Details
         with tab_submission_details:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -80,7 +80,7 @@ def _main_page(self) -> None:
 
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -90,7 +90,7 @@ def _main_page(self) -> None:
 
         # Tab 3: Results (New Submissions)
         with tab_results_new:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -100,7 +100,7 @@ def _main_page(self) -> None:
 
         # Tab 4: Public Submission
         with tab_public_submission:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(

diff --git a/webinterface/pages/4_Quant_LFQ_ion_DIA_diaPASEF.py b/webinterface/pages/4_Quant_LFQ_ion_DIA_diaPASEF.py
@@ -19,7 +19,6 @@ class StreamlitUI:
     def __init__(self):
         self.variables_dia_quant: VariablesDIAQuantdiaPASEF = VariablesDIAQuantdiaPASEF()
         self.texts: Type[WebpageTexts] = WebpageTexts
-        self.texts.ShortMessages.title = "DIA Ion quantification - diaPASEF"
         self.user_input: Dict[str, Any] = dict()
 
         pbb.proteobench_page_config()
@@ -62,7 +61,7 @@ def _main_page(self) -> None:
 
         # Tab 1: Results (All Data)
         with tab_results_all:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -72,7 +71,7 @@ def _main_page(self) -> None:
 
         # Tab 2: Submission Details
         with tab_submission_details:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -82,7 +81,7 @@ def _main_page(self) -> None:
 
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -92,7 +91,7 @@ def _main_page(self) -> None:
 
         # Tab 3: Results (New Submissions)
         with tab_results_new:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(
@@ -102,7 +101,7 @@ def _main_page(self) -> None:
 
         # Tab 4: Public Submission
         with tab_public_submission:
-            st.title(self.variables_dia_quant.texts.ShortMessages.title)
+            st.title(self.variables_dia_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dia_quant.doc_url})")
             if self.variables_dia_quant.beta_warning:
                 st.warning(

diff --git a/webinterface/pages/5_Quant_LFQ_peptidoform_DDA.py b/webinterface/pages/5_Quant_LFQ_peptidoform_DDA.py
@@ -19,7 +19,6 @@ class StreamlitUI:
     def __init__(self):
         self.variables_dda_quant: VariablesDDAQuant = VariablesDDAQuant()
         self.texts: Type[WebpageTexts] = WebpageTexts
-        self.texts.ShortMessages.title = "DDA peptidoform quantification"
 
         self.user_input: Dict[str, Any] = dict()
 
@@ -66,7 +65,7 @@ def _main_page(self) -> None:
         )
 
         with tab_results_all:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -76,7 +75,7 @@ def _main_page(self) -> None:
 
         # Tab 2: Submission Details
         with tab_submission_details:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -86,7 +85,7 @@ def _main_page(self) -> None:
 
         # Tab 2.5: in-depth plots current data
         with tab_indepth_plots:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -96,7 +95,7 @@ def _main_page(self) -> None:
 
         # Tab 3: Results (New Submissions)
         with tab_results_new:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(
@@ -107,7 +106,7 @@ def _main_page(self) -> None:
 
         # Tab 4: Public Submission
         with tab_public_submission:
-            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.title(self.variables_dda_quant.title)
             st.write(f"The full description of the module is available [here]({self.variables_dda_quant.doc_url})")
             if self.variables_dda_quant.beta_warning:
                 st.warning(

diff --git a/webinterface/pages/6_Quant_LFQ_peptidoform_DIA_AIF.py b/webinterface/pages/6_Quant_LFQ_peptidoform_DIA_AIF.py
@@ -17,7 +17,6 @@ class StreamlitUI:
     def __init__(self):
         self.variables_dda_quant: VariablesDIAQuant = VariablesDIAQuant()
         self.texts: Type[WebpageTexts] = WebpageTexts
-        self.texts.ShortMessages.title = "DIA peptidoform quantification"
 
         self.user_input: Dict[str, Any] = dict()
 

diff --git a/webinterface/pages/pages_variables/Quant/lfq/ion/DDA/variables.py b/webinterface/pages/pages_variables/Quant/lfq/ion/DDA/variables.py
@@ -61,3 +61,5 @@ class VariablesDDAQuant:
 
     texts: Type[WebpageTexts] = WebpageTexts
     doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/2-quant-lfq-ion-dda/"
+
+    title: str = "DDA Ion quantification"
diff --git a/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_AIF.py b/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_AIF.py
@@ -58,3 +58,6 @@ class VariablesDIAQuant:
     parse_settings_dir: str = "../proteobench/io/parsing/io_parse_settings/Quant/lfq/ion/DIA/AIF"
 
     texts: Type[WebpageTexts] = WebpageTexts
+    doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/4-quant-lfq-ion-dia-aif/"
+
+    title: str = "DIA Ion quantification - AIF"
diff --git a/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_diaPASEF.py b/webinterface/pages/pages_variables/Quant/lfq/ion/DIA/ion_diaPASEF.py
@@ -63,3 +63,5 @@ class VariablesDIAQuantdiaPASEF:
     texts: Type[WebpageTexts] = WebpageTexts
 
     doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/5-quant-lfq-ion-dia-diapasef/"
+
+    title: str = "DIA Ion quantification - diaPASEF"
diff --git a/webinterface/pages/pages_variables/Quant/lfq/peptidoform/DDA/peptidoform_variables.py b/webinterface/pages/pages_variables/Quant/lfq/peptidoform/DDA/peptidoform_variables.py
@@ -62,3 +62,4 @@ class VariablesDDAQuant:
     texts: Type[WebpageTexts] = WebpageTexts
 
     doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/3-quant-lfq-peptidoform-dda/"
+    title: str = "DDA peptidoform quantification"
diff --git a/webinterface/pages/texts/generic_texts.py b/webinterface/pages/texts/generic_texts.py
@@ -8,8 +8,6 @@ class ShortMessages:
 
         title = "DDA quantification - precursor ions"
 
-        doc_url = "https://proteobench.readthedocs.io/en/latest/available-modules/4-quant-lfq-ion-dia-aif/"
-
         initial_results = """
             Scroll down if you want to see the public benchmark runs publicly available
             today.
Original file line number	Diff line number	Diff line change
Expand Up		@@ -61,3 +61,5 @@ class VariablesDDAQuant:

		texts: Type[WebpageTexts] = WebpageTexts
		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/2-quant-lfq-ion-dda/"

		title: str = "DDA Ion quantification"
Original file line number	Diff line number	Diff line change
Expand Up		@@ -63,3 +63,5 @@ class VariablesDIAQuantdiaPASEF:
		texts: Type[WebpageTexts] = WebpageTexts

		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/5-quant-lfq-ion-dia-diapasef/"

		title: str = "DIA Ion quantification - diaPASEF"
Original file line number	Diff line number	Diff line change
Expand Up		@@ -62,3 +62,4 @@ class VariablesDDAQuant:
		texts: Type[WebpageTexts] = WebpageTexts

		doc_url: str = "https://proteobench.readthedocs.io/en/latest/available-modules/3-quant-lfq-peptidoform-dda/"
		title: str = "DDA peptidoform quantification"