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@dependabot dependabot bot commented on behalf of github Apr 15, 2025

Bumps ihm from 2.2 to 2.4.

Release notes

Sourced from ihm's releases.

python-ihm 2.4 release

  • Add support for fits of model groups or ensembles to cross-links using the new ihm.restraint.CrossLinkGroupFit class.

Full Changelog: ihmwg/python-ihm@2.3...2.4

python-ihm 2.3 release

  • The C-accelerated BinaryCIF parser now supports interval quantization encoding and a wider range of data types.
  • make_mmcif now has a new --histidines option to convert any non-standard histidine names to HIS (#164).
  • Bugfix: don't change name or description of the complete assembly in make_mmcif.
  • Bugfix: if ihm.reference.SeqDif is used to annotate an insertion or deletion, don't erroneously claim the alignment is incorrect.

Full Changelog: ihmwg/python-ihm@2.2...2.3

Changelog

Sourced from ihm's changelog.

2.4 - 2025-03-25

  • Add support for fits of model groups or ensembles to cross-links using the new :class:ihm.restraint.CrossLinkGroupFit class.

2.3 - 2025-03-13

  • The C-accelerated BinaryCIF parser now supports interval quantization encoding and a wider range of data types.
  • make_mmcif now has a new --histidines option to convert any non-standard histidine names to HIS (#164).
  • Bugfix: don't change name or description of the complete assembly in make_mmcif.
  • Bugfix: if :class:ihm.reference.SeqDif is used to annotate an insertion or deletion, don't erroneously claim the alignment is incorrect.
Commits
  • 66fe7ab Prepare for 2.4 release
  • 532e32a Declare support for dictionary version 1.28
  • df30072 Add support for fits of model groups to cross-links
  • 4950604 Prepare for 2.3 release
  • b641dbf Incorrect test structures are now remediated
  • 9fa5eab Only modify HETATM for non-standard HIS
  • fe9693f flake8 fix
  • ff6e73e Don't check SeqDif insertions or deletions
  • 4fa7c71 Don't ignore SeqDif details in comparison
  • cd9fa26 Ignore assembly order in comparison
  • Additional commits viewable in compare view

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Bumps [ihm](https://github.com/ihmwg/python-ihm) from 2.2 to 2.4.
- [Release notes](https://github.com/ihmwg/python-ihm/releases)
- [Changelog](https://github.com/ihmwg/python-ihm/blob/main/ChangeLog.rst)
- [Commits](ihmwg/python-ihm@2.2...2.4)

---
updated-dependencies:
- dependency-name: ihm
  dependency-version: '2.4'
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Apr 15, 2025
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dependabot bot commented on behalf of github Apr 28, 2025

Superseded by #177.

@dependabot dependabot bot closed this Apr 28, 2025
@dependabot dependabot bot deleted the dependabot/pip/ihm-2.4 branch April 28, 2025 08:34
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