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Fix disappearing prefixes on sort #253

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Fix disappearing prefixes on sort #253

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6 changes: 5 additions & 1 deletion pylode/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -292,7 +292,11 @@ def sort_ontology(ont_orig: Graph) -> Graph:
"""Creates a copy of the supplied ontology, sorted by subjects"""
trpls = ont_orig.triples((None, None, None))
trpls_srt = sorted(trpls)
ont_sorted = Graph(bind_namespaces="core")
ont_sorted = Graph(bind_namespaces="none")
# preserve prefix bindings from the original graph's namespace manager
for prefix, ns in ont_orig.namespaces():
p = prefix if prefix is not None else ""
ont_sorted.bind(p, ns)
for trpl in trpls_srt:
ont_sorted.add(trpl)
return ont_sorted
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