RIVM-bioinformatics · github-actions · Jul 3, 2024 · Jul 3, 2024 · Jul 3, 2024
diff --git a/.gitignore b/.gitignore
@@ -130,4 +130,6 @@ dmypy.json
 .pyre/
 
 # IDE
-.vscode/
+.vscode/
+
+test*
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,17 @@
 # Changelog
 
+## [0.6.8](https://github.com/RIVM-bioinformatics/SARS2seq/compare/v0.6.7...v0.6.8) (2024-07-03)
+
+
+### Dependencies
+
+* Update conda environment files to remove the 'intel' channel ([4572252](https://github.com/RIVM-bioinformatics/SARS2seq/commit/4572252e6114937ce05ffd2e8fae60602cc0582a))
+
+
+### Documentation
+
+* update documentation page accordingly ([4572252](https://github.com/RIVM-bioinformatics/SARS2seq/commit/4572252e6114937ce05ffd2e8fae60602cc0582a))
+
 ## [0.6.7](https://github.com/RIVM-bioinformatics/SARS2seq/compare/v0.6.6...v0.6.7) (2024-04-04)
 
 

diff --git a/SARS2seq/version.py b/SARS2seq/version.py
@@ -1 +1 @@
-__version__ = "0.6.7"
+__version__ = "0.6.8"
diff --git a/SARS2seq/workflow/envs/Alignment.yaml b/SARS2seq/workflow/envs/Alignment.yaml
@@ -2,7 +2,6 @@ name: Reference_alignment
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - python=3.7

diff --git a/SARS2seq/workflow/envs/Clean.yaml b/SARS2seq/workflow/envs/Clean.yaml
@@ -2,7 +2,6 @@ name: QC_and_cleanup
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - python=3.8

diff --git a/SARS2seq/workflow/envs/Consensus.yaml b/SARS2seq/workflow/envs/Consensus.yaml
@@ -2,7 +2,6 @@ name: Consensus
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - python=3.7

diff --git a/SARS2seq/workflow/envs/Mutations.yaml b/SARS2seq/workflow/envs/Mutations.yaml
@@ -2,7 +2,6 @@ name: Mutations
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - bcftools==1.14
diff --git a/SARS2seq/workflow/envs/Typing.yaml b/SARS2seq/workflow/envs/Typing.yaml
@@ -2,7 +2,6 @@ name: Typing
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - python=3.7

diff --git a/docs/index.md b/docs/index.md
@@ -36,10 +36,7 @@ git clone https://github.com/RIVM-bioinformatics/SARS2seq.git; cd SARS2seq; git
 1. Create the required conda-environment and install the necessary dependencies.  
     Copy and paste the code-snippet below in order to create the new conda-environment and directly activate it.  
 
-    `conda create --name SARS2seq -c conda-forge mamba python=3.7 -y; conda activate SARS2seq; mamba env update -f mamba-env.yaml`
-
-    You can also use the following snippet if the code-snippet above didn't work for you:  
-    `conda env create -f env.yml && conda activate SARS2seq`  
+    `mamba env create -f env.yml && conda activate SARS2seq`
 
     **The "SARS2seq" environment should now be active**  
 

diff --git a/env.yml b/env.yml
@@ -2,7 +2,6 @@ name: SARS2seq
 channels:
   - bioconda
   - conda-forge
-  - intel
   - nodefaults
 dependencies:
   - python=3.8

diff --git a/mamba-env.yaml b/mamba-env.yaml
-Original file line number
+Diff line change
@@ Expand Up / @@ -130,4 +130,6 @@ dmypy.json @@
     .pyre/
     # IDE
-    .vscode/
+    .vscode/
+    test*