Update README.md

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README.md

@@ -10,10 +10,12 @@ The automated analysis pipeline contains the following steps:
 3. Graph construction
 4. Statistical analysis
 
+![Pipeline](pipeline.png)
+
 For processing larger images it is recommended to use the ClearMap skeletonization. To use that please clone their
 [repository](https://github.com/MartinFinkenflugel/ClearMap2/tree/3617414d6d56709b452b2c5253631eecbede1b85)
-and copy the ClearMap folder into the projects root folder. For further information please read their paper
-[Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature](https://www.sciencedirect.com/science/article/abs/pii/S0092867420301094).
+and copy the ClearMap folder into the projects root folder. For further information please read their 
+[paper](https://www.sciencedirect.com/science/article/abs/pii/S0092867420301094).
 For the graph construction the Python script
 [networkx_graph_from_array](https://github.com/3Scan/3scan-skeleton/blob/master/skeleton/networkx_graph_from_array.py)
 from the
@@ -22,7 +24,7 @@ downloaded from GitHub and copied into the Graph folder. Many thanks to GitHub a
 
 ## Tutorial
 To run the pipeline please follow the instructions below:
-* instsll Miniconda following the [installation instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html)
+* install Miniconda following the [installation instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html)
 * install Snakemake following the [installation instructions](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html)
 or use the runtime environment from the Envs folder which has Snakemake installed.
 * in a terminal navigate to the project's root folder and type