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Summary

Changes

  • 3D tensors throughout the core loop: grid_size now (D, H, W) with 2D promotion; seeding/pooling and competition logic updated to 3D; update model uses 3D convolutions.
  • Training + W&B: CLI accepts 3D grid sizes; live 3D slice-stack visualization; W&B snapshots/videos use 3D slice montages.
  • Visualization tooling: 3D territory volumes, slice-stack renderers (matplotlib/Plotly), population/entropy/compression metrics; Plotly dependency added.
  • visualize_trained.py: new viewer for trained runs with 2D/3D live playback and optional Plotly web view.
  • Config/docs: example config updated for 3D defaults and viz parameters; README adds 3D examples and viz flags.

Sample 3D commands

  • uv run python src/train.py --n-ncas 3 --epochs 200 --grid-size 10 10 10 --live-viz --viz-slice-axis depth
  • uv run python src/visualize_trained.py --model-path <run_dir> --grid-size 10 10 10 --plotly

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