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1. Protein_Structure_database_analysis_for-Chalcogen_interaction Protein_Structure_database_analysis_for-Chalcogen_interaction Public

   This repository contains code used for structural and statestical analysis of Protein Structure Database (PDB) to understand the Sulfur mediated Chalcogen interaction.

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2. Implementing_K-Nearest_Neighbors-KNN-_from_Scratch Implementing_K-Nearest_Neighbors-KNN-_from_Scratch Public

   KNN is a Supervised algorithm that can be used for both classification and regression tasks. KNN is simple to implement. In this code we will implement the KNN algorithm from scratch to perform a c…

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3. pairwise_rmsd pairwise_rmsd Public

   This project entailed the computation of pairwise RMSD for protein structures, contributing to a friend's research on identifying drug binding sites. The derived parameters provided valuable insigh…

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4. PDB_Processor_PySpark PDB_Processor_PySpark Public

   Local data base management program that is routinely used in the lab to process PDB data (~4-5TB).

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5. local-rag-chatpdf local-rag-chatpdf Public

   ChatPDF: A local Retrieval-Augmented Generation (RAG) system that lets you query PDF documents with accuracy and privacy. Built using ChromaDB, Streamlit, and Ollama language models, it provides a …

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6. target-discovery-copilot target-discovery-copilot Public

   Agentic copilot for drug-target discovery using public bio databases (Open Targets, ChEMBL, TCGA, PubMed). Nextflow + dbt-duckdb + LangGraph

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