v0.0.21

What's Changed

• Resolve issue with decomposition plots using static reference genome by @mdbarnesUCSD in #60

Full Changelog: v0.0.20...v0.0.21

v0.0.20

What's Changed

• Added initial JOB_METADATA generation to SPA by @nithishbn in #55
• Include decomposition plots in test script by @mdbarnesUCSD in #56
• flag make_decomposition_plots from SPE by @mdbarnesUCSD in #57
• Development by @mdbarnesUCSD in #59

Full Changelog: v0.0.19...v0.0.20

v0.0.19

• Add probabilities per mutation

v0.0.18

What's Changed

• Fix m_for_subgroups issue by @marcos-diazg in #51
• Expand tests run with Travis by @mdbarnesUCSD in #52
• import decomp plots from assignment, update MANIFEST, fix column name… by @mdbarnesUCSD in #48

Full Changelog: v0.0.17...v0.0.18

v0.0.17

Tmbplot and plotactivity is called from SigProfilerPlotting instead of SPE.

v0.0.16

• Fix TMB plot y-axis when using exome parameter

v0.0.15

• Add subgroups for DBS and ID COSMIC signatures
• Add export_probabilities parameter

v0.0.14

• Add support for multi-sample segmentation files.
• Move decomposition plots to SigProfilerAssignment.

v0.0.13

Update COSMIC 3.3

v0.0.12

Add "input_type" parameter
Change "vcf_opts" parameter to "context_type"
Change "signature_subgroups" parameter to "exclude_signature_subgroups"