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Update to use markups ROI instead of annotations ROI #6

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Update to use markups ROI instead of annotations ROI #6

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16 changes: 7 additions & 9 deletions ZFrameRegistrationWithROI/ZFrameRegistrationWithROI.py
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Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,6 @@ def setup(self):
ScriptedLoadableModuleWidget.setup(self)
self.logic = ZFrameRegistrationWithROILogic()
self.setupSliceWidgets()
self.annotationLogic = slicer.modules.annotations.logic()
self.zFrameRegistrationClass = OpenSourceZFrameRegistration
self.roiObserverTag = None
self.coverTemplateROI = None
Expand Down Expand Up @@ -193,7 +192,7 @@ def addROIObserver(self):
@vtk.calldata_type(vtk.VTK_OBJECT)
def onNodeAdded(caller, event, calldata):
node = calldata
if isinstance(node, slicer.vtkMRMLAnnotationROINode):
if isinstance(node, slicer.vtkMRMLMarkupsROINode):
self.removeROIObserver()
self.coverTemplateROI = node
self.runZFrameRegistrationButton.enabled = self.isRegistrationPossible()
Expand All @@ -210,13 +209,12 @@ def removeROIObserver(self):
self.roiObserverTag = slicer.mrmlScene.RemoveObserver(self.roiObserverTag)

def setROIMode(self, mode):
mrmlScene = self.annotationLogic.GetMRMLScene()
selectionNode = mrmlScene.GetNthNodeByClass(0, "vtkMRMLSelectionNode")
selectionNode.SetReferenceActivePlaceNodeClassName("vtkMRMLAnnotationROINode")
selectionNode = slicer.mrmlScene.GetNthNodeByClass(0, "vtkMRMLSelectionNode")
selectionNode.SetReferenceActivePlaceNodeClassName("vtkMRMLMarkupsROINode")
if mode == False:
self.annotationLogic.StopPlaceMode(False)
slicer.mrmlScene.GetNodeByID("vtkMRMLInteractionNodeSingleton").SwitchToViewTransformMode() # stop place mode
else:
self.annotationLogic.StartPlaceMode(False)
slicer.modules.markups.logic().StartPlaceMode(False)

def onApplyZFrameRegistrationButtonClicked(self):
self.retryZFrameRegistrationButton.enabled = True
Expand Down Expand Up @@ -440,7 +438,7 @@ def test_ZFrameRegistrationWithROI1(self):
self.delayDisplay('Finished with loading')

zFrameRegistrationLogic = ZFrameRegistrationWithROILogic()
ROINode = slicer.vtkMRMLAnnotationROINode()
ROINode = slicer.vtkMRMLMarkupsROINode()
ROINode.SetName("ROINodeForCropping")
ROICenterPoint = [-6.91920280456543, 15.245062828063965, -101.13504791259766]
ROINode.SetXYZ(ROICenterPoint)
Expand Down Expand Up @@ -545,4 +543,4 @@ def onSplitterClick(self):

print(sys.argv)

slicelet = ZFrameRegistrationWithROISlicelet()
slicelet = ZFrameRegistrationWithROISlicelet()