This is a friendly port of some Kilosort parts to be adapted in the SpikeInterface sortingcomponents framework.
At the moment only theses components are ported:
- the template matching
- the clustering
The initial plan was to integrate directly into SpikeInterface these lines of code, but due to Kilosort license (GPL 3), we need an intermediate package with the same license.
Note that the template-matching and cluserting engine is not a copy/paste from the [Kilosort implementation] (https://github.com/MouseLand/Kilosort/blob/main/kilosort/template_matching.py) and (https://github.com/MouseLand/Kilosort/blob/main/kilosort/clustering_qr.py), but rather an adaptation to the SpikeInterface framework. Only a portion of the code is from the original file.
Currently, this package can only be installed from source and it's used for benchmarking purposes:
git clone https://github.com/SpikeInterface/spikeinterface-kilosort-components.git
cd spikeinterface-kilosort-components
pip install -e .