Bump local dependencies

[alexander-yevsyukov]

This PR updates dependencies on Base, ToolBase, and Compiler. API changes were addressed accordingly.

[Copilot]

Pull Request Overview

This PR updates local dependencies on Base (from SNAPSHOT.362 to SNAPSHOT.364), ToolBase (from SNAPSHOT.361 to SNAPSHOT.366), and Compiler (from SNAPSHOT.026 to SNAPSHOT.028). The version of the core-jvm-compiler itself is bumped from SNAPSHOT.016 to SNAPSHOT.017.

Key changes include:

• Migration from removed io.spine.tools.gradle.protobuf package to new io.spine.tools.protobuf.gradle package location
• Addition of protobufSetupPlugins dependency across test and production code
• Renaming of artifact references to align with upstream API changes (e.g., gradleRootPlugin → rootGradlePlugins, jvmToolPlugins artifact name change)

Reviewed Changes

Copilot reviewed 14 out of 15 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
version.gradle.kts	Bumps core-jvm-compiler version to SNAPSHOT.017
pom.xml	Updates all dependency versions and adds protobuf-setup-plugins dependency
dependencies.md	Regenerated dependency report with updated timestamps and version numbers
buildSrc/.../Base.kt	Updates Base version to SNAPSHOT.364
buildSrc/.../Compiler.kt	Updates Compiler fallback versions to SNAPSHOT.028
buildSrc/.../ToolBase.kt	Updates ToolBase version to SNAPSHOT.366, adds dogfoodingVersion constant, renames artifacts, adds protobufSetupPlugins
buildSrc/.../module.gradle.kts	Adds classicCodegen and protobufSetupPlugins to forced configurations
base/build.gradle.kts	Adds protobufSetupPlugins dependency
base/.../ProjectExts.kt	Removes unused rejection-related code and updates import to new protobuf package
grpc/.../GrpcSettings.kt	Updates import to new protobuf package location
ksp/build.gradle.kts	Adds Compiler plugin lib test dependency
ksp/.../KspBasedPlugin.kt	Updates imports to new API, refactors to use new generatedDir and protocOutputDir methods
ksp/.../KspBasedPluginTest.kt	Adds protobuf plugin and Compiler plugin application, sets project group
tests/build.gradle.kts	Adds protobufSetupPlugins dependency

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