CI: fix setup

SyneRBI · Jun 27, 2024 · 5d9f3d5 · 5d9f3d5
1 parent 80efdd6
commit 5d9f3d5
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/.github/workflows/run.yml b/.github/workflows/run.yml
@@ -13,7 +13,10 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Install dependencies
+      shell: bash -el {0}
       run: |
+        source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh
+        conda install -y tensorboard tensorboardx
         if test -f apt.txt; then
           sudo apt-get update
           xargs -a apt.txt sudo apt-get install -y
@@ -25,7 +28,9 @@ jobs:
           pip install -r requirements.txt
         fi
     - name: Test imports
+      shell: bash -el {0}
       run: |
+        source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh
         python <<EOF
         from main import Submission, submission_callbacks
         from cil.optimisation.algorithms import Algorithm