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1. Multi-omics Multi-omics Public

   Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (…

   Python 90 16

2. Transcriptomics-extended Transcriptomics-extended Public

   Runnable R companion walkthrough for bulk RNA-seq analysis with the Bioconductor airway dataset.

   R 40 5

3. Causal-Microbiome-Omics Causal-Microbiome-Omics Public

   Plain-language guide to causal inference for microbiome & multi-omics: DAGs/backdoor, confounders vs mediators/colliders, causal mediation (ACME/ADE/Total), and Double Machine Learning (DML) with t…

   Python 19 3