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Bug fix plus enhancement #22

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Merged
hyi merged 1 commit into from
Oct 28, 2025
Merged

Bug fix plus enhancement #22

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3 changes: 3 additions & 0 deletions biasanalyzer/database.py
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Original file line number Diff line number Diff line change
Expand Up @@ -51,6 +51,9 @@ def _initialize(self, db_url, omop_db_url=None):
else:
raise ValueError("Unsupported OMOP database backend")

# Set self.schema as default schema
self.conn.execute(f"SET schema '{self.schema}'")

self._create_cohort_definition_table()
self._create_cohort_table()

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4 changes: 2 additions & 2 deletions biasanalyzer/sql.py
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Expand Up @@ -39,7 +39,7 @@
SELECT
age_bin,
bin_count,
ROUND(bin_count * 1.0 / SUM(bin_count) OVER (), 4) AS probability -- Normalize to get probability
ROUND(bin_count * 1.0 / SUM(bin_count) OVER (), 2) AS probability -- Normalize to get probability
FROM Age_Distribution
ORDER BY age_bin
'''
Expand Down Expand Up @@ -73,7 +73,7 @@
SELECT
gender,
COALESCE(gender_count, 0) AS gender_count, -- Ensure that NULL gender counts are treated as 0
ROUND(COALESCE(gender_count, 0) * 100.0 / SUM(COALESCE(gender_count, 0)) OVER (), 2) AS probability
ROUND(COALESCE(gender_count, 0) * 1.0 / SUM(COALESCE(gender_count, 0)) OVER (), 2) AS probability
FROM Gender_Distribution
ORDER BY gender;
'''
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