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@@ -2,3 +2,4 @@ | |
| .radian_history | ||
| Scratch.RConsole | ||
| ggheat.Rproj | ||
| inst/doc | ||
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| Original file line number | Diff line number | Diff line change |
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| #################################################################### | ||
| # add annotation into annotation list | ||
| new_annotations <- function(list, active) { | ||
| structure(list, active = active, class = c("annotations", "ggheat")) | ||
| } | ||
|
|
||
| #' @keywords internal | ||
| annotations_add <- function(object, annotations, object_name) { | ||
| UseMethod("annotations_add") | ||
| } | ||
|
|
||
| #' @export | ||
| annotations_add.default <- function(object, annotations, | ||
| object_name) { | ||
| cli::cli_abort("Cannot add {.code {object_name}} into annotations") | ||
| } | ||
|
|
||
| #' @export | ||
| annotations_add.HtannoProto <- function(object, annotations, object_name) { | ||
| # add annotation ------------------------------------- | ||
| new <- list(object) | ||
|
|
||
| # check annotation name is unique -------------------- | ||
| if (!is.null(name <- .subset2(object, "name"))) { | ||
| if (any(rlang::names2(annotations) == name)) { | ||
| cli::cli_warn(paste( | ||
| "{object_name}: {name} annotation is already present", | ||
| "in the {position} annotation of the heatmap" | ||
| )) | ||
| annotations[[name]] <- NULL | ||
| } | ||
| names(new) <- name | ||
| } | ||
| if (.subset(.subset2(object, "set_context"), 2L)) { | ||
| anno_active <- length(annotations) + 1L | ||
| } else { | ||
| anno_active <- get_context(annotations) | ||
| } | ||
| new_annotations(c(annotations, new), anno_active) | ||
| } | ||
|
|
||
| ####################################################### | ||
| # used to add elements for heatmap | ||
| #' @keywords internal | ||
| heatmap_add <- function(object, heatmap, object_name) UseMethod("heatmap_add") | ||
|
|
||
| #' @export | ||
| heatmap_add.gg <- function(object, heatmap, object_name) { | ||
| heatmap@heatmap <- ggplot2::ggplot_add( | ||
| object, slot(heatmap, "heatmap"), object_name | ||
| ) | ||
| heatmap | ||
| } | ||
|
|
||
| #' @export | ||
| heatmap_add.labels <- heatmap_add.gg | ||
|
|
||
| #' @export | ||
| heatmap_add.facetted_pos_scales <- function(object, heatmap, object_name) { | ||
| slot(heatmap, "facetted_pos_scales") <- object | ||
| heatmap | ||
| } | ||
|
|
||
| #################################################################### | ||
| # Following methods are used to add elements to `htanno` object | ||
| htanno_add <- function(object, htanno, object_name) UseMethod("htanno_add") | ||
|
|
||
| #' @export | ||
| htanno_add.gg <- function(object, htanno, object_name) { | ||
| if (is.null(plot <- .subset2(htanno, "plot"))) { | ||
| cli::cli_abort(paste( | ||
| "Can't add {.var {object_name}} to a", | ||
| "{.fn {snake_class(htanno)}} annotation" | ||
| ), call = .subset2(htanno, "call")) | ||
| } | ||
| htanno$plot <- ggplot2::ggplot_add(object, plot, object_name) | ||
| htanno | ||
| } | ||
|
|
||
| #' @export | ||
| htanno_add.labels <- htanno_add.gg | ||
|
|
||
| #' @export | ||
| htanno_add.facetted_pos_scales <- function(object, htanno, object_name) { | ||
| htanno$facetted_pos_scales <- object | ||
| htanno | ||
| } |
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