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AssertionError: Allele "HLA-B*07:02" not stated in NetMHCpan output

Status: Open.

#43 In ambj/MuPeXI;

· mimifp opened on Oct 26, 2023

Unable to access the file http://www.cbs.dtu.dk/services/MuPeXI/SupplTable1.csv described at "MuPeXI: prediction of neo-epitopes from tumor sequencing data​"

Status: Open.

#42 In ambj/MuPeXI;

· zhaoxiaofei opened on Aug 14, 2023

AssertionError: Allele "HLA-A02:01" not stated in NetMHCpan output

Status: Open.

#41 In ambj/MuPeXI;

· Pchaskar opened on Nov 18, 2021

Reference Files for the given example VCF

Status: Open.

#40 In ambj/MuPeXI;

· ALogandha opened on Jul 29, 2021

Mouse reference sequences

Status: Open.

#39 In ambj/MuPeXI;

· samkleeman1 opened on Mar 30, 2021

Issue Installing MuPeXI

Status: Open.

#38 In ambj/MuPeXI;

· leldershaw opened on Oct 14, 2020

Will MuPeXI become compatible with NetMHCpan 4.1?

Status: Open.

#37 In ambj/MuPeXI;

· scyrusm opened on Jul 20, 2020

where can I get the file 'reference_peptide_9.txt'?

Status: Open.

#34 In ambj/MuPeXI;

· 694376965 opened on Aug 26, 2019

gatk4.0.11.0 normal in the first and tumor in the latter, so allele frequence gives the normal sample now, a wrong value, vcf is different from the example.vcf given by the author

Status: Open.

#33 In ambj/MuPeXI;

· kobejamescurry opened on Mar 5, 2019

a big bug? the tmpClyJgf exists, but it is empty, so can not read. how should I reviese it?

Status: Open.

#30 In ambj/MuPeXI;

· kobejamescurry opened on Feb 25, 2019

let us talk about the Monotonicity of the function calculating priority_score

Status: Open.

#29 In ambj/MuPeXI;

· kobejamescurry opened on Jan 24, 2019

Allele_Frequency column is emitted empty

Status: Open.

#28 In ambj/MuPeXI;

· ShahiRB opened on Jan 23, 2019