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aubricot/README.md

Hi! 👋

I'm Katie.

An integrative biologist using computational approaches to maximize the utility of collections-based research and effectively communicate results to the public using data visualization, microscopy and educational technology.

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  1. EOL/computer-vision-with-EOL-images EOL/computer-vision-with-EOL-images Public

    Testing different computer vision methods (object detection, image classification) to do customized, large-scale image processing for Encylopedia of Life images.

    Jupyter Notebook 8 4

  2. nsm nsm Public

    Forked from gattia/nsm

    Neural shape model (nsm) library - modified to work with modern and fossil lizard (Squamate) vertebrae

    Jupyter Notebook 1

  3. Cacao_3D_gmm Cacao_3D_gmm Public

    Files used for 3D gmm analysis of cacao flowers in Wolcott et al. 2023, APPS

    R 1

  4. CV_for_flower_CT CV_for_flower_CT Public

    Computer vision for micro-CT datasets of flowers

    Jupyter Notebook

  5. nrrd2tiff nrrd2tiff Public

    Convert an .nrrd micro-CT XRM dataset to a .tiff stack for upload to MorphoSource

    Jupyter Notebook

  6. bytt_syslitrev bytt_syslitrev Public

    Accompanying code for a systematic literature review of morphology and evolution in the Byttnerioideae (cacao and its relatives)