Release v3.2.0

.github/workflows/release.yml

@@ -79,13 +79,13 @@ jobs:
                 "exclude_labels": ["package: patch", "package: potts"]
               },
               {
-                "title": "#### Features: `patch`",
+                "title": "#### Features: \\x60patch\\x60",
                 "labels": ["type: feature", "package: patch"],
                 "exclude_labels": ["package: potts"],
                 "exhaustive": true
               },
               {
-                "title": "#### Features: `potts`",
+                "title": "#### Features: \\x60potts\\x60",
                 "labels": ["type: feature", "package: potts"],
                 "exclude_labels": ["package: patch"],
                 "exhaustive": true

build.gradle

@@ -5,7 +5,7 @@ plugins {
     id "com.diffplug.spotless" version "6.25.0"
 }
 
-version = "3.1.4"
+version = "3.2.0"
 sourceCompatibility = 1.11
 
 repositories {

docs/_changelog/v3.2.0.md

@@ -0,0 +1,53 @@
+---
+title: v3.2.0
+---
+
+# [v3.2.0](https://github.com/bagherilab/ARCADE/releases/tag/v3.2.0) - 2024-11-18
+
+> Compare with [v3.1.4](https://github.com/bagherilab/ARCADE/compare/v3.1.4...v3.2.0)
+
+### Features
+
+- Update cell make method to return container by [@jessicasyu](https://github.com/jessicasyu) in [#74](https://github.com/bagherilab/ARCADE/pull/74)
+- Update cell constructors to use container by [@jessicasyu](https://github.com/jessicasyu) in [#75](https://github.com/bagherilab/ARCADE/pull/75)
+- Add support for linked populations in setup file by [@jessicasyu](https://github.com/jessicasyu) in [#76](https://github.com/bagherilab/ARCADE/pull/76)
+- Add support for parameter distributions by [@jessicasyu](https://github.com/jessicasyu) in [#85](https://github.com/bagherilab/ARCADE/pull/85)
+
+#### Features: `patch`
+
+- Add support for initialization by percentage by [@jessicasyu](https://github.com/jessicasyu) in [#53](https://github.com/bagherilab/ARCADE/pull/53)
+- Add patch cell agent with random state rules by [@jessicasyu](https://github.com/jessicasyu) in [#56](https://github.com/bagherilab/ARCADE/pull/56)
+- Add support for different patch initialization schemes by [@jessicasyu](https://github.com/jessicasyu) in [#81](https://github.com/bagherilab/ARCADE/pull/81)
+- Pass initial glucose concentration as parameter for metabolism modules by [@allison-li-1016](https://github.com/allison-li-1016) in [#96](https://github.com/bagherilab/ARCADE/pull/96)
+
+#### Features: `potts`
+
+- Added class key for potts populations by [@Jannetty](https://github.com/Jannetty) in [#11](https://github.com/bagherilab/ARCADE/pull/11)
+- Make necessary PottsCell fields public, prepare for abstract setModule() function by [@Jannetty](https://github.com/Jannetty) in [#12](https://github.com/bagherilab/ARCADE/pull/12)
+- Convert PottsCell to abstract class by [@Jannetty](https://github.com/Jannetty) in [#13](https://github.com/bagherilab/ARCADE/pull/13)
+- Add support for splits with offset, direction, and split probability by [@Jannetty](https://github.com/Jannetty) in [#16](https://github.com/bagherilab/ARCADE/pull/16)
+- Add custom plane splitvoxels by [@Jannetty](https://github.com/Jannetty) in [#46](https://github.com/bagherilab/ARCADE/pull/46)
+- Refactor plane constructor to take Double3D instead of Int3D by [@Jannetty](https://github.com/Jannetty) in [#83](https://github.com/bagherilab/ARCADE/pull/83)
+
+### Bug fixes
+
+- Remove apoptosis checkpoint for potts cells by [@jessicasyu](https://github.com/jessicasyu) in [#18](https://github.com/bagherilab/ARCADE/pull/18)
+- Replace instance of wildcard import of Module to prevent clash in Java 9 by [@cainja](https://github.com/cainja) in [#65](https://github.com/bagherilab/ARCADE/pull/65)
+- Fix passing in initial glucose as a parameter value by [@allison-li-1016](https://github.com/allison-li-1016) in [#99](https://github.com/bagherilab/ARCADE/pull/99)
+
+### Tests
+
+- Remove unnecessary mocking in potts cell stem tests by [@jessicasyu](https://github.com/jessicasyu) in [#57](https://github.com/bagherilab/ARCADE/pull/57)
+- Unit tests for core utilities Colors class  by [@cainja](https://github.com/cainja) in [#63](https://github.com/bagherilab/ARCADE/pull/63)
+- Adding tests for core utilities Solver class by [@cainja](https://github.com/cainja) in [#69](https://github.com/bagherilab/ARCADE/pull/69)
+- Improved tests for core utilities Color class by [@cainja](https://github.com/cainja) in [#73](https://github.com/bagherilab/ARCADE/pull/73)
+- Adding tests for core utilities Graph class by [@cainja](https://github.com/cainja) in [#64](https://github.com/bagherilab/ARCADE/pull/64)
+- Adding tests for core utilities Parameter class by [@cainja](https://github.com/cainja) in [#71](https://github.com/bagherilab/ARCADE/pull/71)
+
+### Admin
+
+- Update workflows conditions for main and develop branches by [@jessicasyu](https://github.com/jessicasyu) in [#10](https://github.com/bagherilab/ARCADE/pull/10)
+- Change source compatibility from 1.8 to 1.11 by [@jessicasyu](https://github.com/jessicasyu) in [#66](https://github.com/bagherilab/ARCADE/pull/66)
+- Migrate to JUnit 5 by [@jessicasyu](https://github.com/jessicasyu) in [#67](https://github.com/bagherilab/ARCADE/pull/67)
+- Add spotless autoformatter by [@jessicasyu](https://github.com/jessicasyu) in [#68](https://github.com/bagherilab/ARCADE/pull/68)
+- Update workflows for changelog releases and Jekyll docs by [@jessicasyu](https://github.com/jessicasyu) in [#100](https://github.com/bagherilab/ARCADE/pull/100)

version.properties

@@ -1,4 +1,4 @@
-#Mon, 26 Feb 2024 14:57:57 -0500
+#Mon, 18 Nov 2024 16:44:50 -0500
 major=3
-minor=1
-patch=4
+minor=2
+patch=0